Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06110

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS24015 and AMB_RS06110 are separated by 31 nucleotidesAMB_RS06110 and AMB_RS06115 are separated by 8 nucleotidesAMB_RS06115 and AMB_RS06120 are separated by 159 nucleotides AMB_RS24015: AMB_RS24015 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,275,434 to 1,276,585 _RS24015 AMB_RS06110: AMB_RS06110 - MFS transporter, at 1,276,617 to 1,277,828 _RS06110 AMB_RS06115: AMB_RS06115 - cation transporter, at 1,277,837 to 1,278,463 _RS06115 AMB_RS06120: AMB_RS06120 - MucR family transcriptional regulator, at 1,278,623 to 1,279,084 _RS06120 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 1275.666 kb on + strand, within AMB_RS24015at 1275.817 kb on + strand, within AMB_RS24015at 1275.817 kb on + strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1276.209 kb on + strand, within AMB_RS24015at 1276.209 kb on + strand, within AMB_RS24015at 1276.210 kb on - strand, within AMB_RS24015at 1276.317 kb on + strand, within AMB_RS24015at 1276.561 kb on + strandat 1276.561 kb on + strandat 1276.561 kb on + strandat 1276.561 kb on + strandat 1276.562 kb on - strandat 1276.714 kb on - strandat 1277.011 kb on + strand, within AMB_RS06110at 1277.012 kb on - strand, within AMB_RS06110at 1277.012 kb on - strand, within AMB_RS06110at 1277.136 kb on + strand, within AMB_RS06110at 1277.136 kb on + strand, within AMB_RS06110at 1277.137 kb on - strand, within AMB_RS06110at 1277.137 kb on - strand, within AMB_RS06110at 1277.137 kb on - strand, within AMB_RS06110at 1277.146 kb on + strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.281 kb on - strand, within AMB_RS06110at 1277.349 kb on + strand, within AMB_RS06110at 1277.349 kb on + strand, within AMB_RS06110at 1277.350 kb on - strand, within AMB_RS06110at 1277.539 kb on + strand, within AMB_RS06110at 1277.745 kb on + strandat 1277.746 kb on - strandat 1277.864 kb on + strandat 1277.911 kb on + strand, within AMB_RS06115at 1277.911 kb on + strand, within AMB_RS06115at 1277.911 kb on + strand, within AMB_RS06115at 1277.911 kb on + strand, within AMB_RS06115at 1277.911 kb on + strand, within AMB_RS06115at 1277.912 kb on - strand, within AMB_RS06115at 1277.912 kb on - strand, within AMB_RS06115at 1278.063 kb on + strand, within AMB_RS06115at 1278.116 kb on + strand, within AMB_RS06115at 1278.116 kb on + strand, within AMB_RS06115at 1278.116 kb on + strand, within AMB_RS06115at 1278.117 kb on - strand, within AMB_RS06115at 1278.117 kb on - strand, within AMB_RS06115at 1278.117 kb on - strand, within AMB_RS06115at 1278.117 kb on - strand, within AMB_RS06115at 1278.217 kb on + strand, within AMB_RS06115at 1278.279 kb on + strand, within AMB_RS06115at 1278.341 kb on + strand, within AMB_RS06115at 1278.341 kb on + strand, within AMB_RS06115at 1278.341 kb on + strand, within AMB_RS06115at 1278.376 kb on + strand, within AMB_RS06115at 1278.377 kb on - strand, within AMB_RS06115at 1278.411 kb on + strandat 1278.411 kb on + strandat 1278.519 kb on + strandat 1278.520 kb on - strandat 1278.566 kb on + strandat 1278.567 kb on - strandat 1278.624 kb on + strandat 1278.625 kb on - strandat 1278.762 kb on + strand, within AMB_RS06120at 1278.763 kb on - strand, within AMB_RS06120at 1278.763 kb on - strand, within AMB_RS06120at 1278.763 kb on - strand, within AMB_RS06120at 1278.763 kb on - strand, within AMB_RS06120at 1278.766 kb on + strand, within AMB_RS06120at 1278.767 kb on - strand, within AMB_RS06120at 1278.813 kb on + strand, within AMB_RS06120at 1278.814 kb on - strand, within AMB_RS06120

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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1,275,666 + AMB_RS24015 0.20 -0.0
1,275,817 + AMB_RS24015 0.33 -0.8
1,275,817 + AMB_RS24015 0.33 -0.0
1,275,818 - AMB_RS24015 0.33 -0.0
1,275,818 - AMB_RS24015 0.33 -0.5
1,275,818 - AMB_RS24015 0.33 -0.4
1,275,818 - AMB_RS24015 0.33 -0.6
1,276,209 + AMB_RS24015 0.67 -1.1
1,276,209 + AMB_RS24015 0.67 -1.5
1,276,210 - AMB_RS24015 0.67 -1.2
1,276,317 + AMB_RS24015 0.77 -0.2
1,276,561 + -0.3
1,276,561 + +0.8
1,276,561 + -1.9
1,276,561 + -0.8
1,276,562 - +1.5
1,276,714 - -2.2
1,277,011 + AMB_RS06110 0.33 -0.5
1,277,012 - AMB_RS06110 0.33 +0.7
1,277,012 - AMB_RS06110 0.33 +1.2
1,277,136 + AMB_RS06110 0.43 -0.8
1,277,136 + AMB_RS06110 0.43 -0.8
1,277,137 - AMB_RS06110 0.43 -3.5
1,277,137 - AMB_RS06110 0.43 -2.6
1,277,137 - AMB_RS06110 0.43 +1.5
1,277,146 + AMB_RS06110 0.44 -0.6
1,277,147 - AMB_RS06110 0.44 -1.3
1,277,147 - AMB_RS06110 0.44 -0.5
1,277,147 - AMB_RS06110 0.44 -1.0
1,277,147 - AMB_RS06110 0.44 +0.3
1,277,213 + AMB_RS06110 0.49 -2.3
1,277,213 + AMB_RS06110 0.49 -0.5
1,277,213 + AMB_RS06110 0.49 +0.1
1,277,213 + AMB_RS06110 0.49 -0.0
1,277,213 + AMB_RS06110 0.49 -0.5
1,277,213 + AMB_RS06110 0.49 -0.8
1,277,213 + AMB_RS06110 0.49 -0.0
1,277,213 + AMB_RS06110 0.49 -4.2
1,277,214 - AMB_RS06110 0.49 -1.4
1,277,214 - AMB_RS06110 0.49 -0.4
1,277,214 - AMB_RS06110 0.49 -0.8
1,277,214 - AMB_RS06110 0.49 -0.7
1,277,214 - AMB_RS06110 0.49 -2.5
1,277,214 - AMB_RS06110 0.49 -0.6
1,277,214 - AMB_RS06110 0.49 -0.0
1,277,214 - AMB_RS06110 0.49 -0.5
1,277,214 - AMB_RS06110 0.49 -2.2
1,277,281 - AMB_RS06110 0.55 -0.8
1,277,349 + AMB_RS06110 0.60 -1.0
1,277,349 + AMB_RS06110 0.60 -1.0
1,277,350 - AMB_RS06110 0.60 -0.0
1,277,539 + AMB_RS06110 0.76 +0.5
1,277,745 + -1.5
1,277,746 - -1.0
1,277,864 + -1.7
1,277,911 + AMB_RS06115 0.12 -2.0
1,277,911 + AMB_RS06115 0.12 +0.4
1,277,911 + AMB_RS06115 0.12 -6.0
1,277,911 + AMB_RS06115 0.12 -1.0
1,277,911 + AMB_RS06115 0.12 -1.1
1,277,912 - AMB_RS06115 0.12 -1.6
1,277,912 - AMB_RS06115 0.12 -1.0
1,278,063 + AMB_RS06115 0.36 -2.0
1,278,116 + AMB_RS06115 0.44 -0.2
1,278,116 + AMB_RS06115 0.44 -2.8
1,278,116 + AMB_RS06115 0.44 +0.5
1,278,117 - AMB_RS06115 0.45 -1.6
1,278,117 - AMB_RS06115 0.45 -0.6
1,278,117 - AMB_RS06115 0.45 -0.0
1,278,117 - AMB_RS06115 0.45 -2.8
1,278,217 + AMB_RS06115 0.61 -2.0
1,278,279 + AMB_RS06115 0.70 +1.5
1,278,341 + AMB_RS06115 0.80 -0.9
1,278,341 + AMB_RS06115 0.80 -0.0
1,278,341 + AMB_RS06115 0.80 -1.6
1,278,376 + AMB_RS06115 0.86 +0.2
1,278,377 - AMB_RS06115 0.86 -1.3
1,278,411 + -1.5
1,278,411 + -0.8
1,278,519 + -3.3
1,278,520 - +0.9
1,278,566 + +0.1
1,278,567 - -0.5
1,278,624 + -0.8
1,278,625 - +4.3
1,278,762 + AMB_RS06120 0.30 -0.5
1,278,763 - AMB_RS06120 0.30 -3.0
1,278,763 - AMB_RS06120 0.30 -1.5
1,278,763 - AMB_RS06120 0.30 -3.6
1,278,763 - AMB_RS06120 0.30 -2.4
1,278,766 + AMB_RS06120 0.31 -4.0
1,278,767 - AMB_RS06120 0.31 -0.8
1,278,813 + AMB_RS06120 0.41 -0.5
1,278,814 - AMB_RS06120 0.41 -0.6

Or see this region's nucleotide sequence