Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04970 and AMB_RS04975 are separated by 22 nucleotides AMB_RS04975 and AMB_RS04980 are separated by 49 nucleotides AMB_RS04980 and AMB_RS04985 overlap by 4 nucleotides AMB_RS04985 and AMB_RS04990 overlap by 4 nucleotides
AMB_RS04970: AMB_RS04970 - PDZ domain-containing protein, at 1,032,556 to 1,033,383
_RS04970
AMB_RS04975: AMB_RS04975 - tetratricopeptide repeat protein, at 1,033,406 to 1,034,071
_RS04975
AMB_RS04980: AMB_RS04980 - LemA family protein, at 1,034,121 to 1,034,939
_RS04980
AMB_RS04985: AMB_RS04985 - DNA-binding protein, at 1,034,936 to 1,035,190
_RS04985
AMB_RS04990: AMB_RS04990 - cation transporter, at 1,035,187 to 1,036,077
_RS04990
Position (kb) 1034
1035 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1033.283 kb on + strand, within AMB_RS04970 at 1033.315 kb on - strand at 1033.376 kb on + strand at 1033.376 kb on + strand at 1033.376 kb on + strand at 1033.377 kb on - strand at 1033.377 kb on - strand at 1033.399 kb on + strand at 1033.417 kb on + strand at 1033.417 kb on + strand at 1033.417 kb on + strand at 1033.417 kb on + strand at 1033.418 kb on - strand at 1033.418 kb on - strand at 1033.418 kb on - strand at 1033.424 kb on - strand at 1033.438 kb on + strand at 1033.470 kb on - strand at 1033.559 kb on + strand, within AMB_RS04975 at 1033.559 kb on + strand, within AMB_RS04975 at 1033.559 kb on + strand, within AMB_RS04975 at 1033.559 kb on + strand, within AMB_RS04975 at 1033.560 kb on - strand, within AMB_RS04975 at 1033.560 kb on - strand, within AMB_RS04975 at 1033.560 kb on - strand, within AMB_RS04975 at 1033.634 kb on + strand, within AMB_RS04975 at 1033.634 kb on + strand, within AMB_RS04975 at 1033.635 kb on - strand, within AMB_RS04975 at 1033.686 kb on - strand, within AMB_RS04975 at 1033.722 kb on + strand, within AMB_RS04975 at 1033.723 kb on - strand, within AMB_RS04975 at 1033.723 kb on - strand, within AMB_RS04975 at 1033.723 kb on - strand, within AMB_RS04975 at 1033.787 kb on + strand, within AMB_RS04975 at 1033.787 kb on + strand, within AMB_RS04975 at 1033.787 kb on + strand, within AMB_RS04975 at 1033.787 kb on + strand, within AMB_RS04975 at 1033.787 kb on + strand, within AMB_RS04975 at 1033.788 kb on - strand, within AMB_RS04975 at 1033.788 kb on - strand, within AMB_RS04975 at 1033.788 kb on - strand, within AMB_RS04975 at 1033.788 kb on - strand, within AMB_RS04975 at 1033.788 kb on - strand, within AMB_RS04975 at 1033.788 kb on - strand, within AMB_RS04975 at 1033.788 kb on - strand, within AMB_RS04975 at 1033.806 kb on - strand, within AMB_RS04975 at 1033.806 kb on - strand, within AMB_RS04975 at 1033.806 kb on - strand, within AMB_RS04975 at 1033.991 kb on + strand, within AMB_RS04975 at 1033.991 kb on + strand, within AMB_RS04975 at 1033.992 kb on - strand, within AMB_RS04975 at 1033.992 kb on - strand, within AMB_RS04975 at 1033.992 kb on - strand, within AMB_RS04975 at 1034.078 kb on - strand at 1034.078 kb on - strand at 1034.078 kb on - strand at 1034.078 kb on - strand at 1034.078 kb on - strand at 1034.078 kb on - strand at 1034.109 kb on - strand at 1034.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 1,033,283 + AMB_RS04970 0.88 +0.0 1,033,315 - +4.4 1,033,376 + -3.1 1,033,376 + -1.0 1,033,376 + +2.9 1,033,377 - +0.0 1,033,377 - +3.5 1,033,399 + +1.1 1,033,417 + -1.7 1,033,417 + +3.4 1,033,417 + +3.7 1,033,417 + -0.4 1,033,418 - +3.9 1,033,418 - +3.3 1,033,418 - +3.5 1,033,424 - -3.0 1,033,438 + +0.0 1,033,470 - -1.2 1,033,559 + AMB_RS04975 0.23 +3.8 1,033,559 + AMB_RS04975 0.23 -1.7 1,033,559 + AMB_RS04975 0.23 +4.0 1,033,559 + AMB_RS04975 0.23 -1.0 1,033,560 - AMB_RS04975 0.23 +0.6 1,033,560 - AMB_RS04975 0.23 -1.8 1,033,560 - AMB_RS04975 0.23 -0.7 1,033,634 + AMB_RS04975 0.34 +1.6 1,033,634 + AMB_RS04975 0.34 +4.5 1,033,635 - AMB_RS04975 0.34 +3.3 1,033,686 - AMB_RS04975 0.42 -1.6 1,033,722 + AMB_RS04975 0.47 +4.0 1,033,723 - AMB_RS04975 0.48 -2.6 1,033,723 - AMB_RS04975 0.48 -0.3 1,033,723 - AMB_RS04975 0.48 -2.1 1,033,787 + AMB_RS04975 0.57 +2.8 1,033,787 + AMB_RS04975 0.57 +1.5 1,033,787 + AMB_RS04975 0.57 +3.9 1,033,787 + AMB_RS04975 0.57 +2.7 1,033,787 + AMB_RS04975 0.57 -1.6 1,033,788 - AMB_RS04975 0.57 +2.5 1,033,788 - AMB_RS04975 0.57 -0.7 1,033,788 - AMB_RS04975 0.57 -3.0 1,033,788 - AMB_RS04975 0.57 -1.6 1,033,788 - AMB_RS04975 0.57 +3.9 1,033,788 - AMB_RS04975 0.57 +0.0 1,033,788 - AMB_RS04975 0.57 +4.1 1,033,806 - AMB_RS04975 0.60 -0.4 1,033,806 - AMB_RS04975 0.60 +4.1 1,033,806 - AMB_RS04975 0.60 +4.4 1,033,991 + AMB_RS04975 0.88 -2.2 1,033,991 + AMB_RS04975 0.88 -1.0 1,033,992 - AMB_RS04975 0.88 +4.2 1,033,992 - AMB_RS04975 0.88 -0.4 1,033,992 - AMB_RS04975 0.88 -3.0 1,034,078 - -2.4 1,034,078 - +0.0 1,034,078 - +3.6 1,034,078 - +4.0 1,034,078 - -1.0 1,034,078 - +4.6 1,034,109 - +3.9 1,034,109 - +4.3
Or see this region's nucleotide sequence