Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23685 and AMB_RS23690 are separated by 6 nucleotides AMB_RS23690 and AMB_RS04800 are separated by 390 nucleotides AMB_RS04800 and AMB_RS04805 are separated by 794 nucleotides
AMB_RS23685: AMB_RS23685 - hypothetical protein, at 997,763 to 998,137
_RS23685
AMB_RS23690: AMB_RS23690 - IS110 family transposase, at 998,144 to 998,371
_RS23690
AMB_RS04800: AMB_RS04800 - DUF2384 domain-containing protein, at 998,762 to 999,112
_RS04800
AMB_RS04805: AMB_RS04805 - hemerythrin, at 999,907 to 1,000,380
_RS04805
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 998.449 kb on - strand at 998.449 kb on - strand at 998.554 kb on + strand at 998.555 kb on - strand at 998.555 kb on - strand at 998.671 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.705 kb on + strand at 998.706 kb on - strand at 998.706 kb on - strand at 998.754 kb on - strand at 999.061 kb on + strand, within AMB_RS04800 at 999.061 kb on + strand, within AMB_RS04800 at 999.062 kb on - strand, within AMB_RS04800 at 999.062 kb on - strand, within AMB_RS04800 at 999.062 kb on - strand, within AMB_RS04800 at 999.246 kb on - strand at 999.360 kb on - strand at 999.360 kb on - strand at 999.478 kb on + strand at 999.479 kb on - strand at 999.479 kb on - strand at 999.520 kb on + strand at 999.520 kb on + strand at 999.520 kb on + strand at 999.520 kb on + strand at 999.520 kb on + strand at 999.520 kb on + strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.521 kb on - strand at 999.639 kb on + strand at 999.639 kb on + strand at 999.639 kb on + strand at 999.640 kb on - strand at 999.640 kb on - strand at 999.669 kb on + strand at 999.670 kb on - strand at 999.672 kb on + strand at 999.672 kb on + strand at 999.672 kb on + strand at 999.734 kb on - strand at 999.867 kb on - strand at 999.885 kb on + strand at 999.885 kb on + strand at 999.908 kb on + strand at 999.908 kb on + strand at 999.909 kb on - strand at 999.967 kb on + strand, within AMB_RS04805 at 999.968 kb on - strand, within AMB_RS04805 at 999.978 kb on + strand, within AMB_RS04805 at 999.978 kb on + strand, within AMB_RS04805 at 999.978 kb on + strand, within AMB_RS04805 at 999.978 kb on + strand, within AMB_RS04805 at 999.979 kb on - strand, within AMB_RS04805 at 999.979 kb on - strand, within AMB_RS04805 at 999.980 kb on + strand, within AMB_RS04805 at 999.980 kb on + strand, within AMB_RS04805 at 999.980 kb on + strand, within AMB_RS04805 at 999.980 kb on + strand, within AMB_RS04805 at 999.980 kb on + strand, within AMB_RS04805 at 999.980 kb on + strand, within AMB_RS04805 at 999.981 kb on - strand, within AMB_RS04805 at 999.981 kb on - strand, within AMB_RS04805 at 999.983 kb on - strand, within AMB_RS04805 at 1000.070 kb on + strand, within AMB_RS04805 at 1000.107 kb on + strand, within AMB_RS04805 at 1000.107 kb on + strand, within AMB_RS04805 at 1000.108 kb on - strand, within AMB_RS04805
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 998,449 - -1.8 998,449 - -0.7 998,554 + +1.5 998,555 - -1.0 998,555 - +0.6 998,671 + +0.0 998,701 + +1.7 998,701 + -1.0 998,701 + +0.3 998,701 + -1.7 998,701 + +0.2 998,702 - -1.4 998,702 - +0.0 998,702 - +0.1 998,702 - -3.4 998,702 - -0.8 998,705 + +1.4 998,706 - -1.2 998,706 - -2.5 998,754 - -0.4 999,061 + AMB_RS04800 0.85 +0.5 999,061 + AMB_RS04800 0.85 +1.2 999,062 - AMB_RS04800 0.85 -1.2 999,062 - AMB_RS04800 0.85 -1.4 999,062 - AMB_RS04800 0.85 -0.5 999,246 - -1.2 999,360 - -1.0 999,360 - +0.0 999,478 + +0.7 999,479 - +0.0 999,479 - -1.0 999,520 + -0.1 999,520 + -2.2 999,520 + +0.2 999,520 + -0.4 999,520 + -1.2 999,520 + -4.3 999,521 - +1.3 999,521 - -0.2 999,521 - -3.1 999,521 - -3.7 999,521 - -1.3 999,521 - -1.7 999,521 - -1.7 999,521 - -0.2 999,521 - -2.2 999,521 - -0.4 999,639 + -1.0 999,639 + -0.9 999,639 + -1.2 999,640 - -0.4 999,640 - -1.5 999,669 + -2.8 999,670 - -1.4 999,672 + +0.0 999,672 + +0.6 999,672 + +0.6 999,734 - +0.6 999,867 - -1.0 999,885 + -4.0 999,885 + -0.4 999,908 + -0.5 999,908 + +0.3 999,909 - -0.5 999,967 + AMB_RS04805 0.13 -0.4 999,968 - AMB_RS04805 0.13 -1.2 999,978 + AMB_RS04805 0.15 -0.5 999,978 + AMB_RS04805 0.15 -1.0 999,978 + AMB_RS04805 0.15 -1.2 999,978 + AMB_RS04805 0.15 -0.4 999,979 - AMB_RS04805 0.15 -1.0 999,979 - AMB_RS04805 0.15 -0.7 999,980 + AMB_RS04805 0.15 -0.3 999,980 + AMB_RS04805 0.15 -2.4 999,980 + AMB_RS04805 0.15 -1.8 999,980 + AMB_RS04805 0.15 -2.7 999,980 + AMB_RS04805 0.15 -1.2 999,980 + AMB_RS04805 0.15 +0.7 999,981 - AMB_RS04805 0.16 +0.3 999,981 - AMB_RS04805 0.16 -1.4 999,983 - AMB_RS04805 0.16 -4.1 1,000,070 + AMB_RS04805 0.34 -0.1 1,000,107 + AMB_RS04805 0.42 +1.2 1,000,107 + AMB_RS04805 0.42 -1.5 1,000,108 - AMB_RS04805 0.42 -0.7
Or see this region's nucleotide sequence