Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04660

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04650 and AMB_RS04655 are separated by 0 nucleotidesAMB_RS04655 and AMB_RS04660 are separated by 13 nucleotidesAMB_RS04660 and AMB_RS04665 overlap by 19 nucleotidesAMB_RS04665 and AMB_RS04670 are separated by 429 nucleotides AMB_RS04650: AMB_RS04650 - hypothetical protein, at 974,956 to 975,345 _RS04650 AMB_RS04655: AMB_RS04655 - hypothetical protein, at 975,346 to 975,783 _RS04655 AMB_RS04660: AMB_RS04660 - VWA domain-containing protein, at 975,797 to 977,311 _RS04660 AMB_RS04665: AMB_RS04665 - hypothetical protein, at 977,293 to 977,532 _RS04665 AMB_RS04670: AMB_RS04670 - signal transduction histidine kinase, at 977,962 to 978,675 _RS04670 Position (kb) 975 976 977 978Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 974.835 kb on + strandat 974.836 kb on - strandat 974.836 kb on - strandat 974.836 kb on - strandat 974.876 kb on + strandat 974.891 kb on + strandat 974.891 kb on + strandat 974.892 kb on - strandat 974.892 kb on - strandat 974.938 kb on - strandat 975.047 kb on + strand, within AMB_RS04650at 975.145 kb on - strand, within AMB_RS04650at 975.264 kb on + strand, within AMB_RS04650at 975.357 kb on - strandat 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.608 kb on - strand, within AMB_RS04655at 975.682 kb on + strand, within AMB_RS04655at 975.781 kb on + strandat 975.889 kb on + strandat 975.889 kb on + strandat 975.889 kb on + strandat 975.889 kb on + strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.961 kb on + strand, within AMB_RS04660at 975.962 kb on - strand, within AMB_RS04660at 975.962 kb on - strand, within AMB_RS04660at 975.962 kb on - strand, within AMB_RS04660at 975.989 kb on + strand, within AMB_RS04660at 975.989 kb on + strand, within AMB_RS04660at 975.989 kb on + strand, within AMB_RS04660at 975.990 kb on - strand, within AMB_RS04660at 975.990 kb on - strand, within AMB_RS04660at 975.990 kb on - strand, within AMB_RS04660at 975.991 kb on + strand, within AMB_RS04660at 975.992 kb on - strand, within AMB_RS04660at 976.025 kb on + strand, within AMB_RS04660at 976.026 kb on - strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.185 kb on + strand, within AMB_RS04660at 976.186 kb on - strand, within AMB_RS04660at 976.186 kb on - strand, within AMB_RS04660at 976.226 kb on + strand, within AMB_RS04660at 976.226 kb on + strand, within AMB_RS04660at 976.227 kb on - strand, within AMB_RS04660at 976.259 kb on + strand, within AMB_RS04660at 976.280 kb on + strand, within AMB_RS04660at 976.310 kb on - strand, within AMB_RS04660at 976.343 kb on + strand, within AMB_RS04660at 976.343 kb on + strand, within AMB_RS04660at 976.344 kb on - strand, within AMB_RS04660at 976.442 kb on + strand, within AMB_RS04660at 976.442 kb on + strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.443 kb on - strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.445 kb on + strand, within AMB_RS04660at 976.446 kb on - strand, within AMB_RS04660at 976.446 kb on - strand, within AMB_RS04660at 976.446 kb on - strand, within AMB_RS04660at 976.481 kb on + strand, within AMB_RS04660at 976.481 kb on + strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.482 kb on - strand, within AMB_RS04660at 976.567 kb on + strand, within AMB_RS04660at 976.584 kb on + strand, within AMB_RS04660at 976.584 kb on + strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.585 kb on - strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.725 kb on + strand, within AMB_RS04660at 976.791 kb on + strand, within AMB_RS04660at 976.792 kb on - strand, within AMB_RS04660at 976.792 kb on - strand, within AMB_RS04660at 976.792 kb on - strand, within AMB_RS04660at 976.814 kb on + strand, within AMB_RS04660at 976.814 kb on + strand, within AMB_RS04660at 976.814 kb on + strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.815 kb on - strand, within AMB_RS04660at 976.872 kb on + strand, within AMB_RS04660at 976.873 kb on - strand, within AMB_RS04660at 976.895 kb on + strand, within AMB_RS04660at 976.895 kb on + strand, within AMB_RS04660at 976.896 kb on - strand, within AMB_RS04660at 976.948 kb on + strand, within AMB_RS04660at 976.949 kb on - strand, within AMB_RS04660at 976.949 kb on - strand, within AMB_RS04660at 977.007 kb on + strand, within AMB_RS04660at 977.007 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.114 kb on + strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.115 kb on - strand, within AMB_RS04660at 977.303 kb on - strandat 977.326 kb on - strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.327 kb on + strand, within AMB_RS04665at 977.328 kb on - strand, within AMB_RS04665at 977.328 kb on - strand, within AMB_RS04665at 977.353 kb on + strand, within AMB_RS04665at 977.550 kb on + strandat 977.570 kb on + strandat 977.571 kb on - strandat 977.622 kb on - strandat 977.622 kb on - strandat 977.622 kb on - strandat 977.644 kb on + strandat 977.723 kb on + strandat 977.723 kb on + strandat 977.723 kb on + strandat 977.819 kb on + strandat 977.819 kb on + strandat 977.991 kb on + strandat 977.991 kb on + strandat 977.991 kb on + strandat 977.991 kb on + strandat 977.992 kb on - strandat 977.996 kb on + strandat 977.996 kb on + strandat 977.996 kb on + strandat 977.997 kb on - strandat 978.098 kb on + strand, within AMB_RS04670at 978.098 kb on + strand, within AMB_RS04670at 978.149 kb on + strand, within AMB_RS04670at 978.150 kb on - strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.238 kb on + strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670at 978.239 kb on - strand, within AMB_RS04670

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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974,835 + -0.4
974,836 - -0.2
974,836 - -1.2
974,836 - -4.0
974,876 + -0.0
974,891 + -2.1
974,891 + +1.6
974,892 - -2.1
974,892 - -2.3
974,938 - +0.0
975,047 + AMB_RS04650 0.23 -1.0
975,145 - AMB_RS04650 0.48 -2.4
975,264 + AMB_RS04650 0.79 -0.7
975,357 - +0.0
975,607 + AMB_RS04655 0.60 -0.6
975,607 + AMB_RS04655 0.60 -1.1
975,607 + AMB_RS04655 0.60 -1.1
975,607 + AMB_RS04655 0.60 -0.5
975,607 + AMB_RS04655 0.60 +0.3
975,607 + AMB_RS04655 0.60 -1.2
975,607 + AMB_RS04655 0.60 -1.0
975,608 - AMB_RS04655 0.60 -3.0
975,682 + AMB_RS04655 0.77 -1.2
975,781 + +0.0
975,889 + -0.2
975,889 + +0.6
975,889 + -0.3
975,889 + -0.4
975,890 - -3.0
975,890 - -1.4
975,890 - -1.0
975,890 - -2.6
975,890 - -0.4
975,961 + AMB_RS04660 0.11 -1.8
975,962 - AMB_RS04660 0.11 -1.6
975,962 - AMB_RS04660 0.11 -0.0
975,962 - AMB_RS04660 0.11 -3.6
975,989 + AMB_RS04660 0.13 -1.2
975,989 + AMB_RS04660 0.13 -3.2
975,989 + AMB_RS04660 0.13 -2.6
975,990 - AMB_RS04660 0.13 +0.6
975,990 - AMB_RS04660 0.13 -1.2
975,990 - AMB_RS04660 0.13 +0.0
975,991 + AMB_RS04660 0.13 -0.4
975,992 - AMB_RS04660 0.13 +0.1
976,025 + AMB_RS04660 0.15 -1.1
976,026 - AMB_RS04660 0.15 -0.4
976,183 + AMB_RS04660 0.25 -1.4
976,183 + AMB_RS04660 0.25 -2.7
976,183 + AMB_RS04660 0.25 -0.9
976,183 + AMB_RS04660 0.25 -1.2
976,184 - AMB_RS04660 0.26 -1.0
976,184 - AMB_RS04660 0.26 -4.7
976,184 - AMB_RS04660 0.26 +0.6
976,184 - AMB_RS04660 0.26 +0.2
976,185 + AMB_RS04660 0.26 -0.6
976,186 - AMB_RS04660 0.26 -4.1
976,186 - AMB_RS04660 0.26 -1.0
976,226 + AMB_RS04660 0.28 -2.1
976,226 + AMB_RS04660 0.28 -1.0
976,227 - AMB_RS04660 0.28 +1.7
976,259 + AMB_RS04660 0.30 -0.6
976,280 + AMB_RS04660 0.32 -3.6
976,310 - AMB_RS04660 0.34 -0.7
976,343 + AMB_RS04660 0.36 -1.1
976,343 + AMB_RS04660 0.36 -0.4
976,344 - AMB_RS04660 0.36 -0.7
976,442 + AMB_RS04660 0.43 -0.4
976,442 + AMB_RS04660 0.43 -0.2
976,443 - AMB_RS04660 0.43 -1.1
976,443 - AMB_RS04660 0.43 -1.2
976,443 - AMB_RS04660 0.43 -0.4
976,443 - AMB_RS04660 0.43 +0.0
976,443 - AMB_RS04660 0.43 -0.2
976,443 - AMB_RS04660 0.43 -2.5
976,443 - AMB_RS04660 0.43 -0.5
976,443 - AMB_RS04660 0.43 -1.7
976,443 - AMB_RS04660 0.43 +1.6
976,443 - AMB_RS04660 0.43 -0.5
976,445 + AMB_RS04660 0.43 -3.6
976,445 + AMB_RS04660 0.43 -3.4
976,445 + AMB_RS04660 0.43 -4.8
976,445 + AMB_RS04660 0.43 +0.0
976,445 + AMB_RS04660 0.43 -3.0
976,446 - AMB_RS04660 0.43 -2.0
976,446 - AMB_RS04660 0.43 -0.2
976,446 - AMB_RS04660 0.43 +0.6
976,481 + AMB_RS04660 0.45 -0.7
976,481 + AMB_RS04660 0.45 -0.1
976,482 - AMB_RS04660 0.45 -1.4
976,482 - AMB_RS04660 0.45 -2.9
976,482 - AMB_RS04660 0.45 -1.0
976,482 - AMB_RS04660 0.45 -0.1
976,567 + AMB_RS04660 0.51 +0.2
976,584 + AMB_RS04660 0.52 -1.6
976,584 + AMB_RS04660 0.52 -2.5
976,585 - AMB_RS04660 0.52 -0.9
976,585 - AMB_RS04660 0.52 +0.4
976,585 - AMB_RS04660 0.52 -2.3
976,585 - AMB_RS04660 0.52 -1.2
976,725 + AMB_RS04660 0.61 +0.2
976,725 + AMB_RS04660 0.61 -1.4
976,725 + AMB_RS04660 0.61 -0.4
976,725 + AMB_RS04660 0.61 -0.4
976,791 + AMB_RS04660 0.66 -3.3
976,792 - AMB_RS04660 0.66 -1.0
976,792 - AMB_RS04660 0.66 -0.6
976,792 - AMB_RS04660 0.66 +0.0
976,814 + AMB_RS04660 0.67 -1.1
976,814 + AMB_RS04660 0.67 -1.2
976,814 + AMB_RS04660 0.67 -1.0
976,815 - AMB_RS04660 0.67 -1.6
976,815 - AMB_RS04660 0.67 +0.6
976,815 - AMB_RS04660 0.67 +1.4
976,815 - AMB_RS04660 0.67 -0.7
976,872 + AMB_RS04660 0.71 -1.4
976,873 - AMB_RS04660 0.71 -1.4
976,895 + AMB_RS04660 0.72 +0.0
976,895 + AMB_RS04660 0.72 -2.2
976,896 - AMB_RS04660 0.73 -1.9
976,948 + AMB_RS04660 0.76 +1.6
976,949 - AMB_RS04660 0.76 -1.4
976,949 - AMB_RS04660 0.76 +1.7
977,007 + AMB_RS04660 0.80 +0.0
977,007 + AMB_RS04660 0.80 -1.2
977,114 + AMB_RS04660 0.87 -0.8
977,114 + AMB_RS04660 0.87 -1.5
977,114 + AMB_RS04660 0.87 -0.4
977,114 + AMB_RS04660 0.87 +0.1
977,114 + AMB_RS04660 0.87 -0.4
977,114 + AMB_RS04660 0.87 +0.0
977,115 - AMB_RS04660 0.87 -1.2
977,115 - AMB_RS04660 0.87 -1.7
977,115 - AMB_RS04660 0.87 -0.6
977,115 - AMB_RS04660 0.87 -1.5
977,115 - AMB_RS04660 0.87 -0.5
977,115 - AMB_RS04660 0.87 -0.8
977,115 - AMB_RS04660 0.87 -1.0
977,115 - AMB_RS04660 0.87 +0.9
977,115 - AMB_RS04660 0.87 +0.4
977,303 - +0.0
977,326 - AMB_RS04665 0.14 -0.4
977,327 + AMB_RS04665 0.14 +1.6
977,327 + AMB_RS04665 0.14 -0.4
977,327 + AMB_RS04665 0.14 -2.4
977,327 + AMB_RS04665 0.14 +0.0
977,327 + AMB_RS04665 0.14 -1.7
977,328 - AMB_RS04665 0.15 -4.4
977,328 - AMB_RS04665 0.15 -0.8
977,353 + AMB_RS04665 0.25 -0.2
977,550 + -1.2
977,570 + -0.7
977,571 - -0.9
977,622 - -1.0
977,622 - -1.4
977,622 - -0.7
977,644 + -0.4
977,723 + -4.5
977,723 + -0.6
977,723 + +1.6
977,819 + +0.0
977,819 + +0.6
977,991 + -1.1
977,991 + -0.2
977,991 + -1.8
977,991 + +0.9
977,992 - +1.6
977,996 + -0.4
977,996 + +2.1
977,996 + -0.1
977,997 - +0.6
978,098 + AMB_RS04670 0.19 +0.2
978,098 + AMB_RS04670 0.19 -0.3
978,149 + AMB_RS04670 0.26 -2.0
978,150 - AMB_RS04670 0.26 -1.7
978,238 + AMB_RS04670 0.39 -1.4
978,238 + AMB_RS04670 0.39 -3.5
978,238 + AMB_RS04670 0.39 +0.1
978,238 + AMB_RS04670 0.39 -3.3
978,238 + AMB_RS04670 0.39 -2.8
978,239 - AMB_RS04670 0.39 +0.5
978,239 - AMB_RS04670 0.39 -4.6
978,239 - AMB_RS04670 0.39 -2.2
978,239 - AMB_RS04670 0.39 -2.1

Or see this region's nucleotide sequence