Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04550

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04540 and AMB_RS04545 overlap by 4 nucleotidesAMB_RS04545 and AMB_RS04550 are separated by 4 nucleotidesAMB_RS04550 and AMB_RS04555 overlap by 4 nucleotidesAMB_RS04555 and AMB_RS04560 are separated by 87 nucleotides AMB_RS04540: AMB_RS04540 - C4-dicarboxylate ABC transporter, at 950,283 to 952,346 _RS04540 AMB_RS04545: AMB_RS04545 - DUF1850 domain-containing protein, at 952,343 to 952,699 _RS04545 AMB_RS04550: AMB_RS04550 - C4-dicarboxylate ABC transporter permease, at 952,704 to 953,987 _RS04550 AMB_RS04555: AMB_RS04555 - TRAP transporter small permease, at 953,984 to 954,682 _RS04555 AMB_RS04560: AMB_RS04560 - C4-dicarboxylate ABC transporter, at 954,770 to 955,783 _RS04560 Position (kb) 952 953 954Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.846 kb on + strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.847 kb on - strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.918 kb on + strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 951.919 kb on - strand, within AMB_RS04540at 952.074 kb on + strand, within AMB_RS04540at 952.074 kb on + strand, within AMB_RS04540at 952.074 kb on + strand, within AMB_RS04540at 952.074 kb on + strand, within AMB_RS04540at 952.074 kb on + strand, within AMB_RS04540at 952.074 kb on + strand, within AMB_RS04540at 952.074 kb on + strand, within AMB_RS04540at 952.075 kb on - strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.122 kb on + strand, within AMB_RS04540at 952.123 kb on - strand, within AMB_RS04540at 952.123 kb on - strand, within AMB_RS04540at 952.180 kb on - strandat 952.180 kb on - strandat 952.705 kb on + strandat 952.705 kb on + strandat 952.705 kb on + strandat 952.705 kb on + strandat 952.706 kb on - strandat 952.706 kb on - strandat 952.706 kb on - strandat 952.753 kb on + strandat 952.754 kb on - strandat 952.754 kb on - strandat 952.754 kb on - strandat 952.852 kb on + strand, within AMB_RS04550at 952.852 kb on + strand, within AMB_RS04550at 952.853 kb on - strand, within AMB_RS04550at 952.853 kb on - strand, within AMB_RS04550at 952.853 kb on - strand, within AMB_RS04550at 952.853 kb on - strand, within AMB_RS04550at 952.853 kb on - strand, within AMB_RS04550at 952.853 kb on - strand, within AMB_RS04550at 952.853 kb on - strand, within AMB_RS04550at 953.149 kb on + strand, within AMB_RS04550at 953.149 kb on + strand, within AMB_RS04550at 953.149 kb on + strand, within AMB_RS04550at 953.149 kb on + strand, within AMB_RS04550at 953.150 kb on - strand, within AMB_RS04550at 953.150 kb on - strand, within AMB_RS04550at 953.150 kb on - strand, within AMB_RS04550at 953.214 kb on - strand, within AMB_RS04550at 953.221 kb on + strand, within AMB_RS04550at 953.222 kb on - strand, within AMB_RS04550at 953.222 kb on - strand, within AMB_RS04550at 953.294 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.395 kb on + strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.416 kb on + strand, within AMB_RS04550at 953.417 kb on - strand, within AMB_RS04550at 953.512 kb on + strand, within AMB_RS04550at 953.513 kb on - strand, within AMB_RS04550at 954.225 kb on + strand, within AMB_RS04555at 954.226 kb on - strand, within AMB_RS04555at 954.273 kb on + strand, within AMB_RS04555at 954.315 kb on + strand, within AMB_RS04555at 954.316 kb on - strand, within AMB_RS04555at 954.398 kb on + strand, within AMB_RS04555at 954.399 kb on - strand, within AMB_RS04555at 954.474 kb on - strand, within AMB_RS04555at 954.474 kb on - strand, within AMB_RS04555at 954.480 kb on + strand, within AMB_RS04555at 954.481 kb on - strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.568 kb on - strand, within AMB_RS04555at 954.591 kb on + strand, within AMB_RS04555at 954.592 kb on - strand, within AMB_RS04555at 954.592 kb on - strand, within AMB_RS04555at 954.804 kb on + strandat 954.804 kb on + strandat 954.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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951,846 + AMB_RS04540 0.76 +0.2
951,846 + AMB_RS04540 0.76 -2.5
951,846 + AMB_RS04540 0.76 -4.5
951,846 + AMB_RS04540 0.76 -1.0
951,846 + AMB_RS04540 0.76 -0.3
951,846 + AMB_RS04540 0.76 +2.1
951,846 + AMB_RS04540 0.76 -1.7
951,846 + AMB_RS04540 0.76 +0.8
951,846 + AMB_RS04540 0.76 +0.6
951,846 + AMB_RS04540 0.76 -0.7
951,846 + AMB_RS04540 0.76 -1.1
951,847 - AMB_RS04540 0.76 +0.3
951,847 - AMB_RS04540 0.76 -0.1
951,847 - AMB_RS04540 0.76 +0.3
951,847 - AMB_RS04540 0.76 +1.6
951,847 - AMB_RS04540 0.76 -0.3
951,847 - AMB_RS04540 0.76 +0.1
951,847 - AMB_RS04540 0.76 -4.3
951,847 - AMB_RS04540 0.76 -0.5
951,847 - AMB_RS04540 0.76 +0.9
951,847 - AMB_RS04540 0.76 -1.5
951,918 + AMB_RS04540 0.79 -2.3
951,918 + AMB_RS04540 0.79 -3.2
951,918 + AMB_RS04540 0.79 -2.7
951,918 + AMB_RS04540 0.79 +0.7
951,918 + AMB_RS04540 0.79 -1.9
951,918 + AMB_RS04540 0.79 -0.9
951,918 + AMB_RS04540 0.79 -2.9
951,918 + AMB_RS04540 0.79 +0.2
951,918 + AMB_RS04540 0.79 -1.7
951,918 + AMB_RS04540 0.79 -1.7
951,918 + AMB_RS04540 0.79 +1.6
951,918 + AMB_RS04540 0.79 -0.5
951,918 + AMB_RS04540 0.79 -0.1
951,918 + AMB_RS04540 0.79 +0.3
951,918 + AMB_RS04540 0.79 +0.6
951,918 + AMB_RS04540 0.79 +0.4
951,918 + AMB_RS04540 0.79 -0.1
951,919 - AMB_RS04540 0.79 -2.9
951,919 - AMB_RS04540 0.79 -0.1
951,919 - AMB_RS04540 0.79 +1.4
951,919 - AMB_RS04540 0.79 -0.7
951,919 - AMB_RS04540 0.79 -0.7
951,919 - AMB_RS04540 0.79 -2.4
951,919 - AMB_RS04540 0.79 -2.9
951,919 - AMB_RS04540 0.79 +0.6
951,919 - AMB_RS04540 0.79 -0.4
951,919 - AMB_RS04540 0.79 -2.5
951,919 - AMB_RS04540 0.79 -1.7
951,919 - AMB_RS04540 0.79 -2.4
952,074 + AMB_RS04540 0.87 -1.5
952,074 + AMB_RS04540 0.87 -4.2
952,074 + AMB_RS04540 0.87 +1.4
952,074 + AMB_RS04540 0.87 -2.1
952,074 + AMB_RS04540 0.87 -0.3
952,074 + AMB_RS04540 0.87 -0.7
952,074 + AMB_RS04540 0.87 -1.8
952,075 - AMB_RS04540 0.87 -1.0
952,122 + AMB_RS04540 0.89 -1.2
952,122 + AMB_RS04540 0.89 -0.7
952,122 + AMB_RS04540 0.89 +0.1
952,122 + AMB_RS04540 0.89 -5.0
952,122 + AMB_RS04540 0.89 -3.7
952,122 + AMB_RS04540 0.89 -0.7
952,122 + AMB_RS04540 0.89 -2.5
952,122 + AMB_RS04540 0.89 +0.8
952,122 + AMB_RS04540 0.89 -0.9
952,123 - AMB_RS04540 0.89 -1.8
952,123 - AMB_RS04540 0.89 -1.7
952,180 - -1.7
952,180 - +0.1
952,705 + -2.5
952,705 + -0.6
952,705 + -0.7
952,705 + -0.7
952,706 - +0.0
952,706 - -0.3
952,706 - -1.0
952,753 + -0.4
952,754 - +0.2
952,754 - -0.4
952,754 - -3.9
952,852 + AMB_RS04550 0.12 +0.1
952,852 + AMB_RS04550 0.12 +0.6
952,853 - AMB_RS04550 0.12 -2.8
952,853 - AMB_RS04550 0.12 +0.3
952,853 - AMB_RS04550 0.12 -3.0
952,853 - AMB_RS04550 0.12 -4.2
952,853 - AMB_RS04550 0.12 -2.0
952,853 - AMB_RS04550 0.12 +0.2
952,853 - AMB_RS04550 0.12 -0.7
953,149 + AMB_RS04550 0.35 -1.4
953,149 + AMB_RS04550 0.35 -1.7
953,149 + AMB_RS04550 0.35 -1.5
953,149 + AMB_RS04550 0.35 -0.3
953,150 - AMB_RS04550 0.35 +0.4
953,150 - AMB_RS04550 0.35 -2.1
953,150 - AMB_RS04550 0.35 -2.1
953,214 - AMB_RS04550 0.40 -1.5
953,221 + AMB_RS04550 0.40 -1.4
953,222 - AMB_RS04550 0.40 -0.2
953,222 - AMB_RS04550 0.40 -3.3
953,294 + AMB_RS04550 0.46 -1.0
953,296 + AMB_RS04550 0.46 +0.0
953,296 + AMB_RS04550 0.46 -1.2
953,296 + AMB_RS04550 0.46 +0.0
953,296 + AMB_RS04550 0.46 -1.2
953,296 + AMB_RS04550 0.46 -0.6
953,296 + AMB_RS04550 0.46 -1.1
953,296 + AMB_RS04550 0.46 +0.0
953,297 - AMB_RS04550 0.46 +0.0
953,297 - AMB_RS04550 0.46 -0.4
953,297 - AMB_RS04550 0.46 -1.2
953,297 - AMB_RS04550 0.46 -0.1
953,297 - AMB_RS04550 0.46 -1.2
953,297 - AMB_RS04550 0.46 -0.7
953,297 - AMB_RS04550 0.46 -1.4
953,297 - AMB_RS04550 0.46 -3.3
953,395 + AMB_RS04550 0.54 -0.9
953,396 - AMB_RS04550 0.54 +1.0
953,396 - AMB_RS04550 0.54 +3.7
953,396 - AMB_RS04550 0.54 -1.0
953,396 - AMB_RS04550 0.54 -0.0
953,416 + AMB_RS04550 0.55 -1.2
953,417 - AMB_RS04550 0.56 -0.4
953,512 + AMB_RS04550 0.63 -1.0
953,513 - AMB_RS04550 0.63 -1.2
954,225 + AMB_RS04555 0.34 -1.8
954,226 - AMB_RS04555 0.35 +0.6
954,273 + AMB_RS04555 0.41 +1.7
954,315 + AMB_RS04555 0.47 +0.6
954,316 - AMB_RS04555 0.47 -2.0
954,398 + AMB_RS04555 0.59 +0.0
954,399 - AMB_RS04555 0.59 -0.4
954,474 - AMB_RS04555 0.70 -0.7
954,474 - AMB_RS04555 0.70 -1.4
954,480 + AMB_RS04555 0.71 -0.6
954,481 - AMB_RS04555 0.71 -2.1
954,567 + AMB_RS04555 0.83 -1.4
954,567 + AMB_RS04555 0.83 -1.5
954,567 + AMB_RS04555 0.83 +0.0
954,568 - AMB_RS04555 0.84 -1.2
954,591 + AMB_RS04555 0.87 -3.2
954,592 - AMB_RS04555 0.87 -0.4
954,592 - AMB_RS04555 0.87 -4.0
954,804 + +1.6
954,804 + +0.0
954,805 - -0.7

Or see this region's nucleotide sequence