Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04535

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04530 and AMB_RS04535 are separated by 41 nucleotidesAMB_RS04535 and AMB_RS04540 are separated by 21 nucleotides AMB_RS04530: AMB_RS04530 - hypothetical protein, at 948,265 to 949,281 _RS04530 AMB_RS04535: AMB_RS04535 - C4-dicarboxylate ABC transporter, at 949,323 to 950,261 _RS04535 AMB_RS04540: AMB_RS04540 - C4-dicarboxylate ABC transporter, at 950,283 to 952,346 _RS04540 Position (kb) 949 950 951Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 948.849 kb on - strand, within AMB_RS04530at 949.274 kb on - strandat 949.294 kb on + strandat 949.294 kb on + strandat 949.294 kb on + strandat 949.294 kb on + strandat 949.295 kb on - strandat 949.295 kb on - strandat 949.295 kb on - strandat 949.295 kb on - strandat 949.298 kb on - strandat 949.298 kb on - strandat 949.336 kb on + strandat 949.337 kb on - strandat 949.428 kb on + strand, within AMB_RS04535at 949.428 kb on + strand, within AMB_RS04535at 949.428 kb on + strand, within AMB_RS04535at 949.429 kb on - strand, within AMB_RS04535at 949.431 kb on + strand, within AMB_RS04535at 949.462 kb on - strand, within AMB_RS04535at 949.462 kb on - strand, within AMB_RS04535at 949.614 kb on + strand, within AMB_RS04535at 949.615 kb on - strand, within AMB_RS04535at 949.615 kb on - strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.665 kb on + strand, within AMB_RS04535at 949.665 kb on + strand, within AMB_RS04535at 949.665 kb on + strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.804 kb on - strand, within AMB_RS04535at 949.825 kb on - strand, within AMB_RS04535at 949.825 kb on - strand, within AMB_RS04535at 949.992 kb on + strand, within AMB_RS04535at 949.992 kb on + strand, within AMB_RS04535at 949.992 kb on + strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.995 kb on - strand, within AMB_RS04535at 950.018 kb on + strand, within AMB_RS04535at 950.018 kb on + strand, within AMB_RS04535at 950.019 kb on - strand, within AMB_RS04535at 950.019 kb on - strand, within AMB_RS04535at 950.019 kb on - strand, within AMB_RS04535at 950.023 kb on - strand, within AMB_RS04535at 950.023 kb on - strand, within AMB_RS04535at 950.023 kb on - strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.232 kb on + strandat 950.233 kb on - strandat 950.235 kb on + strandat 950.236 kb on - strandat 950.493 kb on + strand, within AMB_RS04540at 950.494 kb on - strand, within AMB_RS04540at 950.494 kb on - strand, within AMB_RS04540at 950.574 kb on + strand, within AMB_RS04540at 950.584 kb on + strand, within AMB_RS04540at 950.584 kb on + strand, within AMB_RS04540at 950.584 kb on + strand, within AMB_RS04540at 950.584 kb on + strand, within AMB_RS04540at 950.585 kb on - strand, within AMB_RS04540at 950.586 kb on + strand, within AMB_RS04540at 950.586 kb on + strand, within AMB_RS04540at 950.586 kb on + strand, within AMB_RS04540at 950.586 kb on + strand, within AMB_RS04540at 950.586 kb on + strand, within AMB_RS04540at 950.587 kb on - strand, within AMB_RS04540at 950.587 kb on - strand, within AMB_RS04540at 950.587 kb on - strand, within AMB_RS04540at 950.587 kb on - strand, within AMB_RS04540at 950.587 kb on - strand, within AMB_RS04540at 950.587 kb on - strand, within AMB_RS04540at 950.730 kb on + strand, within AMB_RS04540at 950.730 kb on + strand, within AMB_RS04540at 950.731 kb on - strand, within AMB_RS04540at 950.731 kb on - strand, within AMB_RS04540at 950.805 kb on + strand, within AMB_RS04540at 950.805 kb on + strand, within AMB_RS04540at 950.806 kb on - strand, within AMB_RS04540at 950.806 kb on - strand, within AMB_RS04540at 950.806 kb on - strand, within AMB_RS04540at 950.806 kb on - strand, within AMB_RS04540at 950.844 kb on + strand, within AMB_RS04540at 950.844 kb on + strand, within AMB_RS04540at 950.844 kb on + strand, within AMB_RS04540at 950.844 kb on + strand, within AMB_RS04540at 950.844 kb on + strand, within AMB_RS04540at 950.844 kb on + strand, within AMB_RS04540at 950.844 kb on + strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.845 kb on - strand, within AMB_RS04540at 950.859 kb on + strand, within AMB_RS04540at 950.859 kb on + strand, within AMB_RS04540at 950.859 kb on + strand, within AMB_RS04540at 950.859 kb on + strand, within AMB_RS04540at 950.859 kb on + strand, within AMB_RS04540at 950.859 kb on + strand, within AMB_RS04540at 950.860 kb on - strand, within AMB_RS04540at 950.860 kb on - strand, within AMB_RS04540at 950.860 kb on - strand, within AMB_RS04540at 950.860 kb on - strand, within AMB_RS04540at 950.860 kb on - strand, within AMB_RS04540at 950.860 kb on - strand, within AMB_RS04540at 950.951 kb on + strand, within AMB_RS04540at 950.952 kb on - strand, within AMB_RS04540at 951.193 kb on - strand, within AMB_RS04540at 951.193 kb on - strand, within AMB_RS04540at 951.193 kb on - strand, within AMB_RS04540at 951.234 kb on + strand, within AMB_RS04540at 951.234 kb on + strand, within AMB_RS04540at 951.235 kb on - strand, within AMB_RS04540at 951.235 kb on - strand, within AMB_RS04540at 951.237 kb on + strand, within AMB_RS04540at 951.238 kb on - strand, within AMB_RS04540at 951.238 kb on - strand, within AMB_RS04540

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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948,849 - AMB_RS04530 0.57 +0.6
949,274 - +0.2
949,294 + -2.3
949,294 + +0.6
949,294 + -0.9
949,294 + -3.5
949,295 - -4.0
949,295 - -0.4
949,295 - -4.1
949,295 - -2.2
949,298 - +0.2
949,298 - +0.7
949,336 + +0.4
949,337 - -1.9
949,428 + AMB_RS04535 0.11 +0.9
949,428 + AMB_RS04535 0.11 +1.6
949,428 + AMB_RS04535 0.11 -0.6
949,429 - AMB_RS04535 0.11 -0.1
949,431 + AMB_RS04535 0.12 +0.1
949,462 - AMB_RS04535 0.15 -3.8
949,462 - AMB_RS04535 0.15 -0.4
949,614 + AMB_RS04535 0.31 -1.4
949,615 - AMB_RS04535 0.31 -0.5
949,615 - AMB_RS04535 0.31 -0.4
949,656 + AMB_RS04535 0.35 -0.3
949,656 + AMB_RS04535 0.35 -0.6
949,656 + AMB_RS04535 0.35 -2.7
949,656 + AMB_RS04535 0.35 -1.3
949,656 + AMB_RS04535 0.35 -2.9
949,656 + AMB_RS04535 0.35 +0.4
949,657 - AMB_RS04535 0.36 -0.6
949,657 - AMB_RS04535 0.36 +0.2
949,657 - AMB_RS04535 0.36 +0.4
949,657 - AMB_RS04535 0.36 -0.9
949,657 - AMB_RS04535 0.36 -0.9
949,665 + AMB_RS04535 0.36 -3.4
949,665 + AMB_RS04535 0.36 -1.9
949,665 + AMB_RS04535 0.36 -1.5
949,666 - AMB_RS04535 0.37 -2.1
949,666 - AMB_RS04535 0.37 -4.0
949,666 - AMB_RS04535 0.37 -1.5
949,666 - AMB_RS04535 0.37 -1.4
949,666 - AMB_RS04535 0.37 +0.1
949,804 - AMB_RS04535 0.51 -1.3
949,825 - AMB_RS04535 0.53 -0.8
949,825 - AMB_RS04535 0.53 -0.6
949,992 + AMB_RS04535 0.71 -2.9
949,992 + AMB_RS04535 0.71 -0.9
949,992 + AMB_RS04535 0.71 -0.2
949,993 - AMB_RS04535 0.71 -3.9
949,993 - AMB_RS04535 0.71 -0.4
949,993 - AMB_RS04535 0.71 +0.7
949,993 - AMB_RS04535 0.71 -0.9
949,995 - AMB_RS04535 0.72 -2.8
950,018 + AMB_RS04535 0.74 -0.9
950,018 + AMB_RS04535 0.74 +0.6
950,019 - AMB_RS04535 0.74 -0.3
950,019 - AMB_RS04535 0.74 -1.4
950,019 - AMB_RS04535 0.74 -0.7
950,023 - AMB_RS04535 0.75 +0.4
950,023 - AMB_RS04535 0.75 +0.1
950,023 - AMB_RS04535 0.75 -3.6
950,106 + AMB_RS04535 0.83 -0.7
950,106 + AMB_RS04535 0.83 -4.0
950,106 + AMB_RS04535 0.83 -0.6
950,106 + AMB_RS04535 0.83 +0.1
950,106 + AMB_RS04535 0.83 -1.2
950,107 - AMB_RS04535 0.83 -3.5
950,107 - AMB_RS04535 0.83 -2.4
950,107 - AMB_RS04535 0.83 +0.2
950,107 - AMB_RS04535 0.83 +0.6
950,232 + -1.7
950,233 - +0.0
950,235 + -0.4
950,236 - -1.8
950,493 + AMB_RS04540 0.10 -0.7
950,494 - AMB_RS04540 0.10 -0.5
950,494 - AMB_RS04540 0.10 -0.4
950,574 + AMB_RS04540 0.14 -3.9
950,584 + AMB_RS04540 0.15 +0.6
950,584 + AMB_RS04540 0.15 +1.0
950,584 + AMB_RS04540 0.15 -2.1
950,584 + AMB_RS04540 0.15 +0.6
950,585 - AMB_RS04540 0.15 -0.4
950,586 + AMB_RS04540 0.15 -4.6
950,586 + AMB_RS04540 0.15 +1.6
950,586 + AMB_RS04540 0.15 +0.0
950,586 + AMB_RS04540 0.15 -1.2
950,586 + AMB_RS04540 0.15 -0.9
950,587 - AMB_RS04540 0.15 +0.1
950,587 - AMB_RS04540 0.15 -1.2
950,587 - AMB_RS04540 0.15 +0.8
950,587 - AMB_RS04540 0.15 -1.2
950,587 - AMB_RS04540 0.15 +1.6
950,587 - AMB_RS04540 0.15 +0.5
950,730 + AMB_RS04540 0.22 -1.5
950,730 + AMB_RS04540 0.22 -1.2
950,731 - AMB_RS04540 0.22 -1.4
950,731 - AMB_RS04540 0.22 +0.1
950,805 + AMB_RS04540 0.25 -0.7
950,805 + AMB_RS04540 0.25 +0.2
950,806 - AMB_RS04540 0.25 +0.1
950,806 - AMB_RS04540 0.25 -0.4
950,806 - AMB_RS04540 0.25 -1.7
950,806 - AMB_RS04540 0.25 -5.8
950,844 + AMB_RS04540 0.27 -4.5
950,844 + AMB_RS04540 0.27 +0.6
950,844 + AMB_RS04540 0.27 -0.3
950,844 + AMB_RS04540 0.27 -1.2
950,844 + AMB_RS04540 0.27 +0.6
950,844 + AMB_RS04540 0.27 -0.4
950,844 + AMB_RS04540 0.27 +1.6
950,845 - AMB_RS04540 0.27 -1.4
950,845 - AMB_RS04540 0.27 -1.8
950,845 - AMB_RS04540 0.27 +1.0
950,845 - AMB_RS04540 0.27 -1.7
950,845 - AMB_RS04540 0.27 -2.7
950,845 - AMB_RS04540 0.27 -3.3
950,845 - AMB_RS04540 0.27 -2.5
950,845 - AMB_RS04540 0.27 +0.5
950,845 - AMB_RS04540 0.27 -0.4
950,859 + AMB_RS04540 0.28 +0.3
950,859 + AMB_RS04540 0.28 -0.7
950,859 + AMB_RS04540 0.28 -1.8
950,859 + AMB_RS04540 0.28 -4.2
950,859 + AMB_RS04540 0.28 -2.8
950,859 + AMB_RS04540 0.28 +1.6
950,860 - AMB_RS04540 0.28 -4.7
950,860 - AMB_RS04540 0.28 -0.2
950,860 - AMB_RS04540 0.28 -0.5
950,860 - AMB_RS04540 0.28 -0.9
950,860 - AMB_RS04540 0.28 -1.8
950,860 - AMB_RS04540 0.28 -0.4
950,951 + AMB_RS04540 0.32 +0.6
950,952 - AMB_RS04540 0.32 +0.1
951,193 - AMB_RS04540 0.44 -2.1
951,193 - AMB_RS04540 0.44 -0.4
951,193 - AMB_RS04540 0.44 -1.7
951,234 + AMB_RS04540 0.46 +0.5
951,234 + AMB_RS04540 0.46 -0.9
951,235 - AMB_RS04540 0.46 -0.9
951,235 - AMB_RS04540 0.46 -4.8
951,237 + AMB_RS04540 0.46 -4.2
951,238 - AMB_RS04540 0.46 +0.1
951,238 - AMB_RS04540 0.46 -1.1

Or see this region's nucleotide sequence