Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04195 and AMB_RS04200 are separated by 21 nucleotides AMB_RS04200 and AMB_RS04205 are separated by 55 nucleotides AMB_RS04205 and AMB_RS04210 are separated by 68 nucleotides AMB_RS04210 and AMB_RS04215 overlap by 4 nucleotides
AMB_RS04195: AMB_RS04195 - transglutaminase family protein, at 882,996 to 883,871
_RS04195
AMB_RS04200: AMB_RS04200 - hypothetical protein, at 883,893 to 884,099
_RS04200
AMB_RS04205: AMB_RS04205 - PAS domain-containing sensor histidine kinase, at 884,155 to 886,542
_RS04205
AMB_RS04210: AMB_RS04210 - bacterioferritin, at 886,611 to 887,093
_RS04210
AMB_RS04215: AMB_RS04215 - bacterioferritin, at 887,090 to 887,581
_RS04215
Position (kb) 884
885
886
887 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 883.608 kb on + strand, within AMB_RS04195 at 883.870 kb on - strand at 883.870 kb on - strand at 883.900 kb on + strand at 884.030 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.033 kb on - strand, within AMB_RS04200 at 884.033 kb on - strand, within AMB_RS04200 at 884.349 kb on + strand at 884.349 kb on + strand at 884.350 kb on - strand at 884.350 kb on - strand at 884.465 kb on + strand, within AMB_RS04205 at 884.466 kb on - strand, within AMB_RS04205 at 884.466 kb on - strand, within AMB_RS04205 at 884.466 kb on - strand, within AMB_RS04205 at 884.720 kb on + strand, within AMB_RS04205 at 884.720 kb on + strand, within AMB_RS04205 at 884.721 kb on - strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.787 kb on - strand, within AMB_RS04205 at 884.787 kb on - strand, within AMB_RS04205 at 884.787 kb on - strand, within AMB_RS04205 at 884.834 kb on + strand, within AMB_RS04205 at 884.834 kb on + strand, within AMB_RS04205 at 884.834 kb on + strand, within AMB_RS04205 at 884.835 kb on - strand, within AMB_RS04205 at 884.945 kb on + strand, within AMB_RS04205 at 884.945 kb on + strand, within AMB_RS04205 at 884.945 kb on + strand, within AMB_RS04205 at 884.979 kb on - strand, within AMB_RS04205 at 884.979 kb on - strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.143 kb on + strand, within AMB_RS04205 at 885.144 kb on - strand, within AMB_RS04205 at 885.144 kb on - strand, within AMB_RS04205 at 885.144 kb on - strand, within AMB_RS04205 at 885.239 kb on + strand, within AMB_RS04205 at 885.239 kb on + strand, within AMB_RS04205 at 885.239 kb on + strand, within AMB_RS04205 at 885.240 kb on - strand, within AMB_RS04205 at 885.240 kb on - strand, within AMB_RS04205 at 885.240 kb on - strand, within AMB_RS04205 at 885.325 kb on - strand, within AMB_RS04205 at 885.338 kb on + strand, within AMB_RS04205 at 885.348 kb on + strand, within AMB_RS04205 at 885.348 kb on + strand, within AMB_RS04205 at 885.423 kb on + strand, within AMB_RS04205 at 885.423 kb on + strand, within AMB_RS04205 at 885.423 kb on + strand, within AMB_RS04205 at 885.423 kb on + strand, within AMB_RS04205 at 885.423 kb on + strand, within AMB_RS04205 at 885.424 kb on - strand, within AMB_RS04205 at 885.424 kb on - strand, within AMB_RS04205 at 885.525 kb on - strand, within AMB_RS04205 at 885.573 kb on + strand, within AMB_RS04205 at 885.573 kb on + strand, within AMB_RS04205 at 885.574 kb on - strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.575 kb on + strand, within AMB_RS04205 at 885.824 kb on + strand, within AMB_RS04205 at 885.824 kb on + strand, within AMB_RS04205 at 885.825 kb on - strand, within AMB_RS04205 at 885.825 kb on - strand, within AMB_RS04205 at 885.897 kb on - strand, within AMB_RS04205 at 886.206 kb on - strand, within AMB_RS04205 at 886.345 kb on - strand at 886.345 kb on - strand at 886.345 kb on - strand at 886.599 kb on - strand at 886.599 kb on - strand at 886.599 kb on - strand at 886.613 kb on - strand at 886.613 kb on - strand at 886.623 kb on + strand at 886.623 kb on + strand at 886.623 kb on + strand at 886.624 kb on - strand at 886.648 kb on + strand at 886.648 kb on + strand at 886.649 kb on - strand at 886.649 kb on - strand at 886.649 kb on - strand at 886.954 kb on + strand, within AMB_RS04210 at 886.954 kb on + strand, within AMB_RS04210 at 886.954 kb on + strand, within AMB_RS04210 at 886.955 kb on - strand, within AMB_RS04210 at 886.955 kb on - strand, within AMB_RS04210 at 886.955 kb on - strand, within AMB_RS04210 at 886.960 kb on + strand, within AMB_RS04210 at 886.960 kb on + strand, within AMB_RS04210 at 886.961 kb on - strand, within AMB_RS04210 at 886.961 kb on - strand, within AMB_RS04210 at 886.961 kb on - strand, within AMB_RS04210 at 887.020 kb on + strand, within AMB_RS04210 at 887.020 kb on + strand, within AMB_RS04210 at 887.020 kb on + strand, within AMB_RS04210 at 887.021 kb on - strand, within AMB_RS04210 at 887.021 kb on - strand, within AMB_RS04210 at 887.021 kb on - strand, within AMB_RS04210 at 887.133 kb on + strand at 887.133 kb on + strand at 887.241 kb on + strand, within AMB_RS04215 at 887.461 kb on - strand, within AMB_RS04215 at 887.487 kb on + strand, within AMB_RS04215 at 887.488 kb on - strand, within AMB_RS04215 at 887.488 kb on - strand, within AMB_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 883,608 + AMB_RS04195 0.70 -0.7 883,870 - -0.6 883,870 - -1.7 883,900 + -0.1 884,030 + AMB_RS04200 0.66 -1.9 884,032 + AMB_RS04200 0.67 -0.3 884,032 + AMB_RS04200 0.67 -4.0 884,032 + AMB_RS04200 0.67 -1.2 884,032 + AMB_RS04200 0.67 -0.7 884,032 + AMB_RS04200 0.67 +0.1 884,032 + AMB_RS04200 0.67 -2.3 884,032 + AMB_RS04200 0.67 -2.7 884,033 - AMB_RS04200 0.68 -0.3 884,033 - AMB_RS04200 0.68 -1.3 884,349 + -0.7 884,349 + -4.3 884,350 - +1.7 884,350 - -1.9 884,465 + AMB_RS04205 0.13 -2.7 884,466 - AMB_RS04205 0.13 -1.2 884,466 - AMB_RS04205 0.13 +0.4 884,466 - AMB_RS04205 0.13 -1.7 884,720 + AMB_RS04205 0.24 -4.3 884,720 + AMB_RS04205 0.24 -0.4 884,721 - AMB_RS04205 0.24 +1.6 884,786 + AMB_RS04205 0.26 -0.9 884,786 + AMB_RS04205 0.26 +0.4 884,786 + AMB_RS04205 0.26 +4.3 884,786 + AMB_RS04205 0.26 +0.6 884,787 - AMB_RS04205 0.26 -0.9 884,787 - AMB_RS04205 0.26 +0.3 884,787 - AMB_RS04205 0.26 -4.4 884,834 + AMB_RS04205 0.28 -0.7 884,834 + AMB_RS04205 0.28 +1.5 884,834 + AMB_RS04205 0.28 +0.1 884,835 - AMB_RS04205 0.28 -0.4 884,945 + AMB_RS04205 0.33 -0.9 884,945 + AMB_RS04205 0.33 +0.5 884,945 + AMB_RS04205 0.33 -1.2 884,979 - AMB_RS04205 0.35 +0.7 884,979 - AMB_RS04205 0.35 -1.4 885,143 + AMB_RS04205 0.41 +0.1 885,143 + AMB_RS04205 0.41 -0.5 885,143 + AMB_RS04205 0.41 -0.4 885,143 + AMB_RS04205 0.41 +0.1 885,143 + AMB_RS04205 0.41 -0.1 885,143 + AMB_RS04205 0.41 -0.7 885,143 + AMB_RS04205 0.41 -0.9 885,143 + AMB_RS04205 0.41 -0.9 885,144 - AMB_RS04205 0.41 -3.5 885,144 - AMB_RS04205 0.41 -2.0 885,144 - AMB_RS04205 0.41 -0.2 885,239 + AMB_RS04205 0.45 +0.1 885,239 + AMB_RS04205 0.45 +0.7 885,239 + AMB_RS04205 0.45 +0.7 885,240 - AMB_RS04205 0.45 -0.7 885,240 - AMB_RS04205 0.45 -2.3 885,240 - AMB_RS04205 0.45 -0.9 885,325 - AMB_RS04205 0.49 +0.6 885,338 + AMB_RS04205 0.50 -1.8 885,348 + AMB_RS04205 0.50 +0.5 885,348 + AMB_RS04205 0.50 -0.7 885,423 + AMB_RS04205 0.53 -0.5 885,423 + AMB_RS04205 0.53 +0.1 885,423 + AMB_RS04205 0.53 +0.6 885,423 + AMB_RS04205 0.53 +0.8 885,423 + AMB_RS04205 0.53 -0.7 885,424 - AMB_RS04205 0.53 -1.5 885,424 - AMB_RS04205 0.53 -0.8 885,525 - AMB_RS04205 0.57 -0.1 885,573 + AMB_RS04205 0.59 -0.9 885,573 + AMB_RS04205 0.59 -0.6 885,574 - AMB_RS04205 0.59 -0.5 885,575 + AMB_RS04205 0.59 +0.3 885,575 + AMB_RS04205 0.59 -1.2 885,575 + AMB_RS04205 0.59 -0.7 885,575 + AMB_RS04205 0.59 -0.0 885,575 + AMB_RS04205 0.59 +0.2 885,575 + AMB_RS04205 0.59 -5.0 885,575 + AMB_RS04205 0.59 -1.9 885,575 + AMB_RS04205 0.59 +0.7 885,824 + AMB_RS04205 0.70 +0.1 885,824 + AMB_RS04205 0.70 +0.1 885,825 - AMB_RS04205 0.70 +0.1 885,825 - AMB_RS04205 0.70 -0.7 885,897 - AMB_RS04205 0.73 -0.5 886,206 - AMB_RS04205 0.86 -1.5 886,345 - +0.4 886,345 - -2.2 886,345 - -1.1 886,599 - -1.3 886,599 - -0.1 886,599 - -1.3 886,613 - +0.1 886,613 - -0.7 886,623 + -0.7 886,623 + +3.9 886,623 + -0.9 886,624 - -1.2 886,648 + -2.9 886,648 + -0.9 886,649 - +0.1 886,649 - -1.7 886,649 - -0.3 886,954 + AMB_RS04210 0.71 -3.9 886,954 + AMB_RS04210 0.71 -0.4 886,954 + AMB_RS04210 0.71 +1.7 886,955 - AMB_RS04210 0.71 +0.1 886,955 - AMB_RS04210 0.71 -4.2 886,955 - AMB_RS04210 0.71 -1.8 886,960 + AMB_RS04210 0.72 -2.4 886,960 + AMB_RS04210 0.72 -0.8 886,961 - AMB_RS04210 0.72 -1.3 886,961 - AMB_RS04210 0.72 -4.5 886,961 - AMB_RS04210 0.72 -0.3 887,020 + AMB_RS04210 0.85 -2.4 887,020 + AMB_RS04210 0.85 +0.1 887,020 + AMB_RS04210 0.85 +0.1 887,021 - AMB_RS04210 0.85 -1.7 887,021 - AMB_RS04210 0.85 +0.1 887,021 - AMB_RS04210 0.85 +0.1 887,133 + -1.0 887,133 + +0.7 887,241 + AMB_RS04215 0.31 -2.3 887,461 - AMB_RS04215 0.75 -0.7 887,487 + AMB_RS04215 0.81 -0.7 887,488 - AMB_RS04215 0.81 -4.4 887,488 - AMB_RS04215 0.81 -2.1
Or see this region's nucleotide sequence