Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04075 and AMB_RS04080 are separated by 10 nucleotides AMB_RS04080 and AMB_RS04085 are separated by 52 nucleotides AMB_RS04085 and AMB_RS04090 are separated by 60 nucleotides
AMB_RS04075: AMB_RS04075 - membrane protein, at 855,077 to 856,012
_RS04075
AMB_RS04080: AMB_RS04080 - nucleoside-diphosphate-sugar pyrophosphorylase, at 856,023 to 856,757
_RS04080
AMB_RS04085: AMB_RS04085 - GDP-L-fucose synthase, at 856,810 to 857,757
_RS04085
AMB_RS04090: AMB_RS04090 - MFS transporter, at 857,818 to 859,056
_RS04090
Position (kb) 856
857
858 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 855.887 kb on + strand, within AMB_RS04075 at 855.887 kb on + strand, within AMB_RS04075 at 855.887 kb on + strand, within AMB_RS04075 at 855.935 kb on + strand at 855.935 kb on + strand at 855.976 kb on + strand at 855.976 kb on + strand at 855.998 kb on + strand at 856.811 kb on + strand at 856.811 kb on + strand at 856.812 kb on - strand at 856.812 kb on - strand at 856.812 kb on - strand at 856.832 kb on + strand at 856.832 kb on + strand at 856.832 kb on + strand at 856.832 kb on + strand at 856.832 kb on + strand at 856.833 kb on - strand at 856.833 kb on - strand at 856.833 kb on - strand at 856.841 kb on + strand at 856.841 kb on + strand at 857.010 kb on + strand, within AMB_RS04085 at 857.010 kb on + strand, within AMB_RS04085 at 857.010 kb on + strand, within AMB_RS04085 at 857.102 kb on + strand, within AMB_RS04085 at 857.103 kb on - strand, within AMB_RS04085 at 857.279 kb on + strand, within AMB_RS04085 at 857.279 kb on + strand, within AMB_RS04085 at 857.291 kb on + strand, within AMB_RS04085 at 857.292 kb on - strand, within AMB_RS04085 at 857.292 kb on - strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.334 kb on - strand, within AMB_RS04085 at 857.334 kb on - strand, within AMB_RS04085 at 857.334 kb on - strand, within AMB_RS04085 at 857.408 kb on + strand, within AMB_RS04085 at 857.409 kb on - strand, within AMB_RS04085 at 857.498 kb on + strand, within AMB_RS04085 at 857.498 kb on + strand, within AMB_RS04085 at 857.543 kb on - strand, within AMB_RS04085 at 857.771 kb on + strand at 857.771 kb on + strand at 857.794 kb on + strand at 857.794 kb on + strand at 857.795 kb on - strand at 857.795 kb on - strand at 857.988 kb on - strand, within AMB_RS04090 at 858.646 kb on - strand, within AMB_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 855,887 + AMB_RS04075 0.87 -2.4 855,887 + AMB_RS04075 0.87 -2.2 855,887 + AMB_RS04075 0.87 -1.5 855,935 + -1.7 855,935 + -2.2 855,976 + -6.2 855,976 + -1.5 855,998 + -3.2 856,811 + +0.9 856,811 + -1.7 856,812 - +0.2 856,812 - -3.1 856,812 - -0.2 856,832 + -0.9 856,832 + -1.8 856,832 + +0.1 856,832 + -0.9 856,832 + -2.1 856,833 - +0.1 856,833 - +0.1 856,833 - +0.7 856,841 + -0.3 856,841 + +0.4 857,010 + AMB_RS04085 0.21 -0.7 857,010 + AMB_RS04085 0.21 +0.1 857,010 + AMB_RS04085 0.21 -0.6 857,102 + AMB_RS04085 0.31 -1.2 857,103 - AMB_RS04085 0.31 -1.2 857,279 + AMB_RS04085 0.49 -0.1 857,279 + AMB_RS04085 0.49 +0.5 857,291 + AMB_RS04085 0.51 +1.3 857,292 - AMB_RS04085 0.51 +1.4 857,292 - AMB_RS04085 0.51 -1.5 857,333 + AMB_RS04085 0.55 +0.7 857,333 + AMB_RS04085 0.55 -2.1 857,333 + AMB_RS04085 0.55 -0.9 857,333 + AMB_RS04085 0.55 -1.3 857,333 + AMB_RS04085 0.55 +0.4 857,334 - AMB_RS04085 0.55 -2.2 857,334 - AMB_RS04085 0.55 +1.2 857,334 - AMB_RS04085 0.55 +0.4 857,408 + AMB_RS04085 0.63 -1.2 857,409 - AMB_RS04085 0.63 -0.2 857,498 + AMB_RS04085 0.73 -0.3 857,498 + AMB_RS04085 0.73 -0.9 857,543 - AMB_RS04085 0.77 -1.7 857,771 + +0.1 857,771 + +0.7 857,794 + -0.7 857,794 + -3.2 857,795 - -0.2 857,795 - -2.2 857,988 - AMB_RS04090 0.14 -2.5 858,646 - AMB_RS04090 0.67 +0.1
Or see this region's nucleotide sequence