Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03940 and AMB_RS03945 are separated by 8 nucleotides AMB_RS03945 and AMB_RS03950 are separated by 44 nucleotides AMB_RS03950 and AMB_RS03955 overlap by 4 nucleotides
AMB_RS03940: AMB_RS03940 - glycine dehydrogenase (aminomethyl-transferring), at 825,562 to 827,061
_RS03940
AMB_RS03945: AMB_RS03945 - hypothetical protein, at 827,070 to 828,869
_RS03945
AMB_RS03950: AMB_RS03950 - 4-hydroxybenzoate octaprenyltransferase, at 828,914 to 829,828
_RS03950
AMB_RS03955: AMB_RS03955 - methyltransferase, at 829,825 to 830,490
_RS03955
Position (kb) 827
828
829 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 826.136 kb on - strand, within AMB_RS03940 at 826.137 kb on + strand, within AMB_RS03940 at 826.138 kb on - strand, within AMB_RS03940 at 826.138 kb on - strand, within AMB_RS03940 at 826.138 kb on - strand, within AMB_RS03940 at 826.312 kb on + strand, within AMB_RS03940 at 826.312 kb on + strand, within AMB_RS03940 at 826.489 kb on + strand, within AMB_RS03940 at 826.489 kb on + strand, within AMB_RS03940 at 826.489 kb on + strand, within AMB_RS03940 at 826.489 kb on + strand, within AMB_RS03940 at 826.489 kb on + strand, within AMB_RS03940 at 826.490 kb on - strand, within AMB_RS03940 at 826.490 kb on - strand, within AMB_RS03940 at 826.490 kb on - strand, within AMB_RS03940 at 826.609 kb on + strand, within AMB_RS03940 at 826.609 kb on + strand, within AMB_RS03940 at 826.609 kb on + strand, within AMB_RS03940 at 826.609 kb on + strand, within AMB_RS03940 at 826.609 kb on + strand, within AMB_RS03940 at 826.609 kb on + strand, within AMB_RS03940 at 826.610 kb on - strand, within AMB_RS03940 at 826.610 kb on - strand, within AMB_RS03940 at 826.610 kb on - strand, within AMB_RS03940 at 826.610 kb on - strand, within AMB_RS03940 at 826.610 kb on - strand, within AMB_RS03940 at 826.675 kb on + strand, within AMB_RS03940 at 826.675 kb on + strand, within AMB_RS03940 at 826.675 kb on + strand, within AMB_RS03940 at 826.675 kb on + strand, within AMB_RS03940 at 826.676 kb on - strand, within AMB_RS03940 at 826.676 kb on - strand, within AMB_RS03940 at 826.676 kb on - strand, within AMB_RS03940 at 826.816 kb on + strand, within AMB_RS03940 at 826.817 kb on - strand, within AMB_RS03940 at 826.817 kb on - strand, within AMB_RS03940 at 826.817 kb on - strand, within AMB_RS03940 at 826.834 kb on + strand, within AMB_RS03940 at 826.834 kb on + strand, within AMB_RS03940 at 826.834 kb on + strand, within AMB_RS03940 at 826.834 kb on + strand, within AMB_RS03940 at 826.834 kb on + strand, within AMB_RS03940 at 826.834 kb on + strand, within AMB_RS03940 at 826.834 kb on + strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.835 kb on - strand, within AMB_RS03940 at 826.896 kb on + strand, within AMB_RS03940 at 826.896 kb on + strand, within AMB_RS03940 at 826.897 kb on - strand, within AMB_RS03940 at 827.060 kb on - strand at 827.158 kb on + strand at 827.225 kb on + strand at 827.225 kb on + strand at 827.225 kb on + strand at 827.226 kb on - strand at 827.226 kb on - strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.229 kb on + strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.230 kb on - strand at 827.664 kb on + strand, within AMB_RS03945 at 827.948 kb on - strand, within AMB_RS03945 at 827.979 kb on + strand, within AMB_RS03945 at 827.979 kb on + strand, within AMB_RS03945 at 827.980 kb on - strand, within AMB_RS03945 at 828.302 kb on + strand, within AMB_RS03945 at 828.314 kb on + strand, within AMB_RS03945 at 828.315 kb on - strand, within AMB_RS03945 at 828.315 kb on - strand, within AMB_RS03945 at 828.351 kb on + strand, within AMB_RS03945 at 828.558 kb on + strand, within AMB_RS03945 at 828.558 kb on + strand, within AMB_RS03945 at 828.559 kb on - strand, within AMB_RS03945 at 828.559 kb on - strand, within AMB_RS03945 at 828.559 kb on - strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.603 kb on + strand, within AMB_RS03945 at 828.604 kb on - strand, within AMB_RS03945 at 828.604 kb on - strand, within AMB_RS03945 at 828.604 kb on - strand, within AMB_RS03945 at 828.604 kb on - strand, within AMB_RS03945 at 828.604 kb on - strand, within AMB_RS03945 at 828.605 kb on + strand, within AMB_RS03945 at 828.605 kb on + strand, within AMB_RS03945 at 828.689 kb on + strand, within AMB_RS03945 at 828.699 kb on + strand at 828.699 kb on + strand at 828.700 kb on - strand at 828.700 kb on - strand at 828.700 kb on - strand at 828.700 kb on - strand at 828.765 kb on + strand at 828.766 kb on - strand at 828.867 kb on + strand at 828.867 kb on + strand at 828.867 kb on + strand at 828.868 kb on - strand at 828.902 kb on + strand at 828.902 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.824 kb on + strand at 829.846 kb on + strand at 829.846 kb on + strand at 829.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 826,136 - AMB_RS03940 0.38 -0.2 826,137 + AMB_RS03940 0.38 +1.1 826,138 - AMB_RS03940 0.38 -0.8 826,138 - AMB_RS03940 0.38 +0.7 826,138 - AMB_RS03940 0.38 -0.9 826,312 + AMB_RS03940 0.50 -1.8 826,312 + AMB_RS03940 0.50 +1.0 826,489 + AMB_RS03940 0.62 +0.3 826,489 + AMB_RS03940 0.62 -1.3 826,489 + AMB_RS03940 0.62 -1.7 826,489 + AMB_RS03940 0.62 +1.7 826,489 + AMB_RS03940 0.62 -1.2 826,490 - AMB_RS03940 0.62 -1.8 826,490 - AMB_RS03940 0.62 -0.3 826,490 - AMB_RS03940 0.62 -2.3 826,609 + AMB_RS03940 0.70 -1.1 826,609 + AMB_RS03940 0.70 +0.1 826,609 + AMB_RS03940 0.70 -0.9 826,609 + AMB_RS03940 0.70 +0.7 826,609 + AMB_RS03940 0.70 +0.5 826,609 + AMB_RS03940 0.70 +0.8 826,610 - AMB_RS03940 0.70 +1.7 826,610 - AMB_RS03940 0.70 -0.9 826,610 - AMB_RS03940 0.70 -0.6 826,610 - AMB_RS03940 0.70 -0.9 826,610 - AMB_RS03940 0.70 +1.7 826,675 + AMB_RS03940 0.74 -0.9 826,675 + AMB_RS03940 0.74 -2.5 826,675 + AMB_RS03940 0.74 -0.7 826,675 + AMB_RS03940 0.74 -0.3 826,676 - AMB_RS03940 0.74 +0.0 826,676 - AMB_RS03940 0.74 +0.4 826,676 - AMB_RS03940 0.74 +0.1 826,816 + AMB_RS03940 0.84 -3.9 826,817 - AMB_RS03940 0.84 +0.0 826,817 - AMB_RS03940 0.84 -1.9 826,817 - AMB_RS03940 0.84 -1.8 826,834 + AMB_RS03940 0.85 -2.5 826,834 + AMB_RS03940 0.85 -1.9 826,834 + AMB_RS03940 0.85 -0.3 826,834 + AMB_RS03940 0.85 -3.2 826,834 + AMB_RS03940 0.85 -3.0 826,834 + AMB_RS03940 0.85 +2.2 826,834 + AMB_RS03940 0.85 -0.9 826,835 - AMB_RS03940 0.85 -1.3 826,835 - AMB_RS03940 0.85 +0.7 826,835 - AMB_RS03940 0.85 -1.6 826,835 - AMB_RS03940 0.85 -0.9 826,835 - AMB_RS03940 0.85 -4.5 826,835 - AMB_RS03940 0.85 -1.2 826,835 - AMB_RS03940 0.85 -2.5 826,835 - AMB_RS03940 0.85 -3.3 826,835 - AMB_RS03940 0.85 -1.2 826,896 + AMB_RS03940 0.89 +0.3 826,896 + AMB_RS03940 0.89 -1.2 826,897 - AMB_RS03940 0.89 +0.1 827,060 - +1.7 827,158 + -1.3 827,225 + -2.7 827,225 + -1.3 827,225 + -0.6 827,226 - -1.2 827,226 - +2.1 827,229 + -3.2 827,229 + -1.9 827,229 + -1.9 827,229 + +2.1 827,229 + -2.6 827,229 + -2.9 827,229 + -2.6 827,229 + -2.0 827,229 + +0.5 827,230 - -0.3 827,230 - +0.3 827,230 - -1.9 827,230 - +0.6 827,230 - -0.4 827,230 - +0.1 827,230 - -0.3 827,230 - -2.9 827,230 - -1.4 827,230 - -2.2 827,230 - -0.3 827,230 - -1.8 827,230 - -1.3 827,230 - +0.7 827,230 - -0.3 827,230 - -3.2 827,230 - -1.2 827,230 - -0.3 827,230 - +0.1 827,230 - -0.3 827,230 - -1.2 827,230 - -1.5 827,664 + AMB_RS03945 0.33 +0.0 827,948 - AMB_RS03945 0.49 -0.3 827,979 + AMB_RS03945 0.51 +0.1 827,979 + AMB_RS03945 0.51 -0.3 827,980 - AMB_RS03945 0.51 -0.3 828,302 + AMB_RS03945 0.68 -1.9 828,314 + AMB_RS03945 0.69 -1.7 828,315 - AMB_RS03945 0.69 -2.3 828,315 - AMB_RS03945 0.69 -0.4 828,351 + AMB_RS03945 0.71 +0.3 828,558 + AMB_RS03945 0.83 +0.1 828,558 + AMB_RS03945 0.83 +0.6 828,559 - AMB_RS03945 0.83 +0.1 828,559 - AMB_RS03945 0.83 -0.7 828,559 - AMB_RS03945 0.83 -1.2 828,603 + AMB_RS03945 0.85 -2.2 828,603 + AMB_RS03945 0.85 -0.7 828,603 + AMB_RS03945 0.85 -0.6 828,603 + AMB_RS03945 0.85 -0.9 828,603 + AMB_RS03945 0.85 -2.8 828,603 + AMB_RS03945 0.85 -2.6 828,603 + AMB_RS03945 0.85 -0.3 828,603 + AMB_RS03945 0.85 +0.7 828,603 + AMB_RS03945 0.85 -1.0 828,603 + AMB_RS03945 0.85 +0.6 828,604 - AMB_RS03945 0.85 -2.7 828,604 - AMB_RS03945 0.85 +1.0 828,604 - AMB_RS03945 0.85 -1.8 828,604 - AMB_RS03945 0.85 -1.7 828,604 - AMB_RS03945 0.85 +1.7 828,605 + AMB_RS03945 0.85 -3.2 828,605 + AMB_RS03945 0.85 -2.3 828,689 + AMB_RS03945 0.90 -1.5 828,699 + +0.3 828,699 + -1.5 828,700 - -0.3 828,700 - -0.3 828,700 - -0.7 828,700 - -2.3 828,765 + -1.3 828,766 - -2.7 828,867 + -1.2 828,867 + +0.2 828,867 + -0.9 828,868 - -1.2 828,902 + +3.5 828,902 + +1.6 829,824 + -1.3 829,824 + -1.2 829,824 + +0.1 829,824 + +1.2 829,824 + +0.1 829,824 + +0.8 829,824 + +1.0 829,824 + -2.8 829,824 + -1.5 829,824 + -2.8 829,824 + -1.7 829,824 + -1.7 829,824 + +0.7 829,824 + -0.7 829,824 + -0.7 829,824 + -1.0 829,824 + -0.5 829,824 + +1.2 829,824 + -1.2 829,846 + -1.3 829,846 + +0.8 829,847 - -1.9
Or see this region's nucleotide sequence