Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23150 and AMB_RS03835 are separated by 19 nucleotides AMB_RS03835 and AMB_RS03840 are separated by 5 nucleotides AMB_RS03840 and AMB_RS03845 are separated by 19 nucleotides
AMB_RS23150: AMB_RS23150 - nucleotidyltransferase, at 807,090 to 807,620
_RS23150
AMB_RS03835: AMB_RS03835 - YicC family protein, at 807,640 to 808,539
_RS03835
AMB_RS03840: AMB_RS03840 - guanylate kinase, at 808,545 to 809,189
_RS03840
AMB_RS03845: AMB_RS03845 - MFS transporter, at 809,209 to 810,423
_RS03845
Position (kb) 808
809
810 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 807.547 kb on + strand, within AMB_RS23150 at 807.548 kb on - strand, within AMB_RS23150 at 807.548 kb on - strand, within AMB_RS23150 at 807.602 kb on + strand at 807.602 kb on + strand at 807.604 kb on + strand at 807.604 kb on + strand at 807.604 kb on + strand at 808.438 kb on - strand, within AMB_RS03835 at 808.438 kb on - strand, within AMB_RS03835 at 808.537 kb on + strand at 808.537 kb on + strand at 809.306 kb on + strand at 809.306 kb on + strand at 809.307 kb on - strand at 809.324 kb on + strand at 809.406 kb on - strand, within AMB_RS03845 at 809.406 kb on - strand, within AMB_RS03845 at 809.406 kb on - strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.573 kb on + strand, within AMB_RS03845 at 809.574 kb on - strand, within AMB_RS03845 at 809.585 kb on + strand, within AMB_RS03845 at 809.585 kb on + strand, within AMB_RS03845 at 810.015 kb on + strand, within AMB_RS03845 at 810.015 kb on + strand, within AMB_RS03845 at 810.016 kb on - strand, within AMB_RS03845
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 807,547 + AMB_RS23150 0.86 -0.3 807,548 - AMB_RS23150 0.86 -0.8 807,548 - AMB_RS23150 0.86 -2.6 807,602 + -0.9 807,602 + -0.9 807,604 + +0.1 807,604 + -0.9 807,604 + +0.8 808,438 - AMB_RS03835 0.89 -1.9 808,438 - AMB_RS03835 0.89 -1.3 808,537 + -1.5 808,537 + -1.3 809,306 + +0.4 809,306 + -0.2 809,307 - -0.9 809,324 + +0.0 809,406 - AMB_RS03845 0.16 -2.6 809,406 - AMB_RS03845 0.16 -0.4 809,406 - AMB_RS03845 0.16 -0.7 809,555 + AMB_RS03845 0.28 -1.5 809,555 + AMB_RS03845 0.28 -1.3 809,555 + AMB_RS03845 0.28 -1.2 809,555 + AMB_RS03845 0.28 -1.8 809,556 - AMB_RS03845 0.29 +0.4 809,556 - AMB_RS03845 0.29 +1.0 809,556 - AMB_RS03845 0.29 -4.2 809,556 - AMB_RS03845 0.29 -0.9 809,573 + AMB_RS03845 0.30 +0.0 809,574 - AMB_RS03845 0.30 -0.7 809,585 + AMB_RS03845 0.31 -2.2 809,585 + AMB_RS03845 0.31 -0.7 810,015 + AMB_RS03845 0.66 +0.6 810,015 + AMB_RS03845 0.66 +0.7 810,016 - AMB_RS03845 0.66 -1.4
Or see this region's nucleotide sequence