Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03800

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03795 and AMB_RS03800 are separated by 70 nucleotidesAMB_RS03800 and AMB_RS03805 are separated by 32 nucleotidesAMB_RS03805 and AMB_RS03810 are separated by 7 nucleotides AMB_RS03795: AMB_RS03795 - hypothetical protein, at 801,919 to 802,755 _RS03795 AMB_RS03800: AMB_RS03800 - protoheme IX farnesyltransferase 1, at 802,826 to 803,677 _RS03800 AMB_RS03805: AMB_RS03805 - DUF420 domain-containing protein, at 803,710 to 804,132 _RS03805 AMB_RS03810: AMB_RS03810 - anion transporter, at 804,140 to 805,369 _RS03810 Position (kb) 802 803 804Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 801.837 kb on + strandat 801.841 kb on + strandat 801.842 kb on - strandat 801.866 kb on - strandat 801.870 kb on + strandat 802.135 kb on + strand, within AMB_RS03795at 802.136 kb on - strand, within AMB_RS03795at 802.408 kb on + strand, within AMB_RS03795at 802.408 kb on + strand, within AMB_RS03795at 802.408 kb on + strand, within AMB_RS03795at 802.409 kb on - strand, within AMB_RS03795at 802.754 kb on - strandat 802.872 kb on + strandat 802.873 kb on - strandat 802.873 kb on - strandat 802.931 kb on + strand, within AMB_RS03800at 802.932 kb on - strand, within AMB_RS03800at 802.983 kb on + strand, within AMB_RS03800at 802.983 kb on + strand, within AMB_RS03800at 802.983 kb on + strand, within AMB_RS03800at 802.984 kb on - strand, within AMB_RS03800at 802.984 kb on - strand, within AMB_RS03800at 802.984 kb on - strand, within AMB_RS03800at 802.984 kb on - strand, within AMB_RS03800at 802.984 kb on - strand, within AMB_RS03800at 802.984 kb on - strand, within AMB_RS03800at 803.118 kb on + strand, within AMB_RS03800at 803.119 kb on - strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.275 kb on + strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.276 kb on - strand, within AMB_RS03800at 803.310 kb on + strand, within AMB_RS03800at 803.310 kb on + strand, within AMB_RS03800at 803.310 kb on + strand, within AMB_RS03800at 803.310 kb on + strand, within AMB_RS03800at 803.311 kb on - strand, within AMB_RS03800at 803.311 kb on - strand, within AMB_RS03800at 803.311 kb on - strand, within AMB_RS03800at 803.322 kb on + strand, within AMB_RS03800at 803.322 kb on + strand, within AMB_RS03800at 803.322 kb on + strand, within AMB_RS03800at 803.322 kb on + strand, within AMB_RS03800at 803.322 kb on + strand, within AMB_RS03800at 803.322 kb on + strand, within AMB_RS03800at 803.323 kb on - strand, within AMB_RS03800at 803.323 kb on - strand, within AMB_RS03800at 803.323 kb on - strand, within AMB_RS03800at 803.540 kb on + strand, within AMB_RS03800at 803.541 kb on - strand, within AMB_RS03800at 803.541 kb on - strand, within AMB_RS03800at 803.661 kb on + strandat 803.661 kb on + strandat 803.661 kb on + strandat 803.661 kb on + strandat 803.661 kb on + strandat 803.661 kb on + strandat 803.661 kb on + strandat 803.662 kb on - strandat 803.662 kb on - strandat 803.662 kb on - strandat 803.717 kb on + strandat 803.717 kb on + strandat 803.717 kb on + strandat 803.717 kb on + strandat 803.718 kb on - strandat 803.718 kb on - strandat 803.718 kb on - strandat 803.718 kb on - strandat 803.718 kb on - strandat 803.718 kb on - strandat 803.718 kb on - strandat 803.719 kb on + strandat 803.719 kb on + strandat 803.719 kb on + strandat 803.720 kb on - strandat 803.720 kb on - strandat 803.720 kb on - strandat 803.720 kb on - strandat 803.726 kb on + strandat 803.726 kb on + strandat 803.727 kb on - strandat 803.733 kb on + strandat 803.733 kb on + strandat 803.733 kb on + strandat 803.733 kb on + strandat 803.733 kb on + strandat 803.734 kb on - strandat 803.734 kb on - strandat 803.734 kb on - strandat 803.734 kb on - strandat 803.738 kb on + strandat 803.739 kb on - strandat 803.765 kb on + strand, within AMB_RS03805at 803.765 kb on + strand, within AMB_RS03805at 803.765 kb on + strand, within AMB_RS03805at 803.765 kb on + strand, within AMB_RS03805at 803.765 kb on + strand, within AMB_RS03805at 803.765 kb on + strand, within AMB_RS03805at 803.765 kb on + strand, within AMB_RS03805at 803.766 kb on - strand, within AMB_RS03805at 803.766 kb on - strand, within AMB_RS03805at 803.766 kb on - strand, within AMB_RS03805at 803.766 kb on - strand, within AMB_RS03805at 803.766 kb on - strand, within AMB_RS03805at 803.894 kb on - strand, within AMB_RS03805at 803.900 kb on + strand, within AMB_RS03805at 803.901 kb on - strand, within AMB_RS03805at 803.901 kb on - strand, within AMB_RS03805at 803.901 kb on - strand, within AMB_RS03805at 803.901 kb on - strand, within AMB_RS03805at 803.903 kb on + strand, within AMB_RS03805at 803.903 kb on + strand, within AMB_RS03805at 803.903 kb on + strand, within AMB_RS03805at 803.903 kb on + strand, within AMB_RS03805at 803.903 kb on + strand, within AMB_RS03805at 803.904 kb on - strand, within AMB_RS03805at 803.960 kb on + strand, within AMB_RS03805at 803.961 kb on - strand, within AMB_RS03805at 803.961 kb on - strand, within AMB_RS03805at 803.969 kb on + strand, within AMB_RS03805at 803.969 kb on + strand, within AMB_RS03805at 803.969 kb on + strand, within AMB_RS03805at 803.969 kb on + strand, within AMB_RS03805at 803.969 kb on + strand, within AMB_RS03805at 803.969 kb on + strand, within AMB_RS03805at 803.970 kb on - strand, within AMB_RS03805at 804.048 kb on + strand, within AMB_RS03805at 804.049 kb on - strand, within AMB_RS03805at 804.105 kb on + strandat 804.106 kb on - strandat 804.280 kb on + strand, within AMB_RS03810

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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801,837 + +1.6
801,841 + -0.9
801,842 - -0.3
801,866 - +0.6
801,870 + +0.6
802,135 + AMB_RS03795 0.26 -0.0
802,136 - AMB_RS03795 0.26 +1.6
802,408 + AMB_RS03795 0.58 +0.2
802,408 + AMB_RS03795 0.58 +0.6
802,408 + AMB_RS03795 0.58 +0.3
802,409 - AMB_RS03795 0.59 -3.4
802,754 - -0.7
802,872 + -0.4
802,873 - -2.1
802,873 - -2.1
802,931 + AMB_RS03800 0.12 +0.6
802,932 - AMB_RS03800 0.12 -1.5
802,983 + AMB_RS03800 0.18 +1.4
802,983 + AMB_RS03800 0.18 -1.2
802,983 + AMB_RS03800 0.18 +1.6
802,984 - AMB_RS03800 0.19 +1.1
802,984 - AMB_RS03800 0.19 +1.8
802,984 - AMB_RS03800 0.19 -0.4
802,984 - AMB_RS03800 0.19 -1.5
802,984 - AMB_RS03800 0.19 -0.1
802,984 - AMB_RS03800 0.19 +0.3
803,118 + AMB_RS03800 0.34 -0.7
803,119 - AMB_RS03800 0.34 +0.1
803,275 + AMB_RS03800 0.53 -0.4
803,275 + AMB_RS03800 0.53 -0.4
803,275 + AMB_RS03800 0.53 -0.5
803,275 + AMB_RS03800 0.53 -1.2
803,275 + AMB_RS03800 0.53 -1.2
803,275 + AMB_RS03800 0.53 -2.6
803,275 + AMB_RS03800 0.53 -0.0
803,275 + AMB_RS03800 0.53 +0.8
803,275 + AMB_RS03800 0.53 -1.7
803,276 - AMB_RS03800 0.53 -3.0
803,276 - AMB_RS03800 0.53 -1.9
803,276 - AMB_RS03800 0.53 -2.4
803,276 - AMB_RS03800 0.53 -2.5
803,276 - AMB_RS03800 0.53 -1.1
803,276 - AMB_RS03800 0.53 -0.9
803,276 - AMB_RS03800 0.53 -1.4
803,276 - AMB_RS03800 0.53 -2.0
803,276 - AMB_RS03800 0.53 -0.8
803,276 - AMB_RS03800 0.53 -1.4
803,276 - AMB_RS03800 0.53 -1.2
803,276 - AMB_RS03800 0.53 -1.4
803,310 + AMB_RS03800 0.57 -1.9
803,310 + AMB_RS03800 0.57 +2.5
803,310 + AMB_RS03800 0.57 -0.7
803,310 + AMB_RS03800 0.57 -4.4
803,311 - AMB_RS03800 0.57 -0.4
803,311 - AMB_RS03800 0.57 -3.4
803,311 - AMB_RS03800 0.57 -2.4
803,322 + AMB_RS03800 0.58 -0.4
803,322 + AMB_RS03800 0.58 -1.9
803,322 + AMB_RS03800 0.58 +0.3
803,322 + AMB_RS03800 0.58 -1.0
803,322 + AMB_RS03800 0.58 -0.6
803,322 + AMB_RS03800 0.58 -2.0
803,323 - AMB_RS03800 0.58 +0.3
803,323 - AMB_RS03800 0.58 -0.8
803,323 - AMB_RS03800 0.58 +0.7
803,540 + AMB_RS03800 0.84 -0.0
803,541 - AMB_RS03800 0.84 -1.2
803,541 - AMB_RS03800 0.84 +0.1
803,661 + -4.0
803,661 + -0.2
803,661 + -0.7
803,661 + +0.1
803,661 + -1.6
803,661 + +1.6
803,661 + +0.2
803,662 - -4.5
803,662 - -0.2
803,662 - +0.2
803,717 + -0.8
803,717 + -0.6
803,717 + +3.5
803,717 + +1.7
803,718 - -0.7
803,718 - -2.9
803,718 - -0.3
803,718 - +1.2
803,718 - -0.5
803,718 - -0.7
803,718 - -1.3
803,719 + -0.0
803,719 + -2.9
803,719 + +0.7
803,720 - -0.7
803,720 - -1.1
803,720 - -0.3
803,720 - -1.5
803,726 + -4.6
803,726 + +1.7
803,727 - -3.6
803,733 + +0.8
803,733 + -0.7
803,733 + -0.6
803,733 + -0.9
803,733 + -2.1
803,734 - -3.0
803,734 - -1.3
803,734 - -0.5
803,734 - -0.7
803,738 + +1.2
803,739 - +1.0
803,765 + AMB_RS03805 0.13 -1.7
803,765 + AMB_RS03805 0.13 +0.7
803,765 + AMB_RS03805 0.13 -1.5
803,765 + AMB_RS03805 0.13 +1.3
803,765 + AMB_RS03805 0.13 -1.2
803,765 + AMB_RS03805 0.13 +0.4
803,765 + AMB_RS03805 0.13 -3.8
803,766 - AMB_RS03805 0.13 +0.9
803,766 - AMB_RS03805 0.13 -0.3
803,766 - AMB_RS03805 0.13 -0.2
803,766 - AMB_RS03805 0.13 -1.2
803,766 - AMB_RS03805 0.13 +0.7
803,894 - AMB_RS03805 0.43 -0.7
803,900 + AMB_RS03805 0.45 +0.7
803,901 - AMB_RS03805 0.45 +0.3
803,901 - AMB_RS03805 0.45 -0.3
803,901 - AMB_RS03805 0.45 -2.9
803,901 - AMB_RS03805 0.45 -1.7
803,903 + AMB_RS03805 0.46 -1.2
803,903 + AMB_RS03805 0.46 -0.2
803,903 + AMB_RS03805 0.46 -2.1
803,903 + AMB_RS03805 0.46 +0.1
803,903 + AMB_RS03805 0.46 -1.5
803,904 - AMB_RS03805 0.46 +0.8
803,960 + AMB_RS03805 0.59 +0.2
803,961 - AMB_RS03805 0.59 -0.7
803,961 - AMB_RS03805 0.59 -1.0
803,969 + AMB_RS03805 0.61 -1.3
803,969 + AMB_RS03805 0.61 -0.7
803,969 + AMB_RS03805 0.61 +2.1
803,969 + AMB_RS03805 0.61 +0.1
803,969 + AMB_RS03805 0.61 +0.4
803,969 + AMB_RS03805 0.61 +0.5
803,970 - AMB_RS03805 0.61 -2.3
804,048 + AMB_RS03805 0.80 -1.7
804,049 - AMB_RS03805 0.80 -2.2
804,105 + -0.7
804,106 - -0.2
804,280 + AMB_RS03810 0.11 -1.8

Or see this region's nucleotide sequence