Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03675

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03665 and AMB_RS03670 are separated by 59 nucleotidesAMB_RS03670 and AMB_RS03675 overlap by 17 nucleotidesAMB_RS03675 and AMB_RS03680 overlap by 4 nucleotides AMB_RS03665: AMB_RS03665 - UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase, at 773,878 to 774,852 _RS03665 AMB_RS03670: AMB_RS03670 - N-acetyltransferase, at 774,912 to 775,385 _RS03670 AMB_RS03675: AMB_RS03675 - UDP-N-acetylglucosamine 4,6-dehydratase (inverting), at 775,369 to 776,451 _RS03675 AMB_RS03680: AMB_RS03680 - UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase, at 776,448 to 777,644 _RS03680 Position (kb) 775 776 777Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 774.868 kb on + strandat 774.868 kb on + strandat 774.869 kb on - strandat 774.887 kb on - strandat 774.887 kb on - strandat 774.889 kb on - strandat 774.889 kb on - strandat 775.439 kb on - strandat 775.439 kb on - strandat 775.441 kb on + strandat 775.441 kb on + strandat 775.441 kb on + strandat 775.442 kb on - strandat 775.442 kb on - strandat 775.442 kb on - strandat 775.442 kb on - strandat 775.442 kb on - strandat 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.633 kb on + strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.767 kb on + strand, within AMB_RS03675at 775.767 kb on + strand, within AMB_RS03675at 775.868 kb on - strand, within AMB_RS03675at 775.957 kb on + strand, within AMB_RS03675at 775.958 kb on - strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.260 kb on + strand, within AMB_RS03675at 776.260 kb on + strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.294 kb on - strand, within AMB_RS03675at 776.294 kb on - strand, within AMB_RS03675at 776.294 kb on - strand, within AMB_RS03675at 776.394 kb on + strandat 776.395 kb on - strandat 776.395 kb on - strandat 776.473 kb on - strandat 776.473 kb on - strandat 776.473 kb on - strandat 776.501 kb on + strandat 776.501 kb on + strandat 776.502 kb on - strandat 776.502 kb on - strandat 776.727 kb on + strand, within AMB_RS03680at 776.727 kb on + strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.210 kb on + strand, within AMB_RS03680at 777.210 kb on + strand, within AMB_RS03680at 777.211 kb on - strand, within AMB_RS03680at 777.304 kb on - strand, within AMB_RS03680at 777.337 kb on + strand, within AMB_RS03680at 777.337 kb on + strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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774,868 + -0.6
774,868 + -3.5
774,869 - -0.2
774,887 - +0.2
774,887 - -0.9
774,889 - +0.2
774,889 - -1.7
775,439 - -0.3
775,439 - -1.4
775,441 + -0.7
775,441 + -0.8
775,441 + +0.3
775,442 - -1.4
775,442 - -0.9
775,442 - -2.1
775,442 - +1.6
775,442 - -0.3
775,537 + AMB_RS03675 0.16 -0.7
775,537 + AMB_RS03675 0.16 -1.8
775,537 + AMB_RS03675 0.16 -0.2
775,537 + AMB_RS03675 0.16 -0.9
775,537 + AMB_RS03675 0.16 -0.4
775,538 - AMB_RS03675 0.16 -0.5
775,538 - AMB_RS03675 0.16 -1.1
775,538 - AMB_RS03675 0.16 +0.6
775,538 - AMB_RS03675 0.16 -1.5
775,633 + AMB_RS03675 0.24 -0.5
775,634 - AMB_RS03675 0.24 -0.7
775,634 - AMB_RS03675 0.24 -1.7
775,634 - AMB_RS03675 0.24 +1.0
775,634 - AMB_RS03675 0.24 -1.2
775,738 + AMB_RS03675 0.34 -2.4
775,738 + AMB_RS03675 0.34 -0.7
775,738 + AMB_RS03675 0.34 +0.9
775,738 + AMB_RS03675 0.34 +0.1
775,738 + AMB_RS03675 0.34 -0.9
775,738 + AMB_RS03675 0.34 -1.2
775,738 + AMB_RS03675 0.34 -1.9
775,739 - AMB_RS03675 0.34 -0.0
775,739 - AMB_RS03675 0.34 -2.0
775,739 - AMB_RS03675 0.34 -0.4
775,739 - AMB_RS03675 0.34 -0.6
775,767 + AMB_RS03675 0.37 -1.2
775,767 + AMB_RS03675 0.37 -1.0
775,868 - AMB_RS03675 0.46 -4.3
775,957 + AMB_RS03675 0.54 -0.7
775,958 - AMB_RS03675 0.54 -2.1
776,134 + AMB_RS03675 0.71 -0.8
776,134 + AMB_RS03675 0.71 +0.6
776,134 + AMB_RS03675 0.71 -0.5
776,134 + AMB_RS03675 0.71 -0.4
776,134 + AMB_RS03675 0.71 -1.4
776,134 + AMB_RS03675 0.71 -1.4
776,134 + AMB_RS03675 0.71 +1.6
776,134 + AMB_RS03675 0.71 -1.8
776,134 + AMB_RS03675 0.71 -0.9
776,134 + AMB_RS03675 0.71 -3.7
776,134 + AMB_RS03675 0.71 -1.2
776,134 + AMB_RS03675 0.71 -0.2
776,134 + AMB_RS03675 0.71 -3.9
776,134 + AMB_RS03675 0.71 -5.7
776,134 + AMB_RS03675 0.71 -1.4
776,134 + AMB_RS03675 0.71 -1.5
776,134 + AMB_RS03675 0.71 -3.8
776,135 - AMB_RS03675 0.71 -2.7
776,135 - AMB_RS03675 0.71 -2.7
776,135 - AMB_RS03675 0.71 -0.9
776,135 - AMB_RS03675 0.71 -0.1
776,135 - AMB_RS03675 0.71 -2.4
776,135 - AMB_RS03675 0.71 -4.5
776,135 - AMB_RS03675 0.71 -0.4
776,135 - AMB_RS03675 0.71 -2.8
776,135 - AMB_RS03675 0.71 -2.0
776,135 - AMB_RS03675 0.71 -4.8
776,135 - AMB_RS03675 0.71 -2.3
776,135 - AMB_RS03675 0.71 -3.8
776,135 - AMB_RS03675 0.71 -1.5
776,135 - AMB_RS03675 0.71 +0.1
776,135 - AMB_RS03675 0.71 -1.4
776,260 + AMB_RS03675 0.82 -1.4
776,260 + AMB_RS03675 0.82 -2.3
776,261 - AMB_RS03675 0.82 -0.9
776,261 - AMB_RS03675 0.82 -5.1
776,261 - AMB_RS03675 0.82 +0.2
776,261 - AMB_RS03675 0.82 -0.3
776,293 + AMB_RS03675 0.85 -0.0
776,293 + AMB_RS03675 0.85 -1.5
776,293 + AMB_RS03675 0.85 -1.2
776,293 + AMB_RS03675 0.85 -2.1
776,293 + AMB_RS03675 0.85 +0.6
776,293 + AMB_RS03675 0.85 -5.4
776,293 + AMB_RS03675 0.85 -0.7
776,293 + AMB_RS03675 0.85 -3.1
776,293 + AMB_RS03675 0.85 +0.6
776,294 - AMB_RS03675 0.85 -0.3
776,294 - AMB_RS03675 0.85 +2.4
776,294 - AMB_RS03675 0.85 -3.2
776,394 + +1.9
776,395 - -1.4
776,395 - -0.2
776,473 - -1.4
776,473 - -1.8
776,473 - +0.4
776,501 + -2.6
776,501 + +0.4
776,502 - +0.3
776,502 - -0.0
776,727 + AMB_RS03680 0.23 +0.1
776,727 + AMB_RS03680 0.23 -1.7
776,728 - AMB_RS03680 0.23 +0.2
776,728 - AMB_RS03680 0.23 -0.2
776,728 - AMB_RS03680 0.23 -0.7
776,728 - AMB_RS03680 0.23 +0.6
777,180 + AMB_RS03680 0.61 +1.6
777,180 + AMB_RS03680 0.61 +0.6
777,180 + AMB_RS03680 0.61 -0.7
777,183 + AMB_RS03680 0.61 -1.4
777,183 + AMB_RS03680 0.61 -0.9
777,183 + AMB_RS03680 0.61 +0.1
777,184 - AMB_RS03680 0.61 -0.0
777,184 - AMB_RS03680 0.61 -1.5
777,184 - AMB_RS03680 0.61 +0.6
777,184 - AMB_RS03680 0.61 -0.0
777,184 - AMB_RS03680 0.61 -1.1
777,210 + AMB_RS03680 0.64 -2.3
777,210 + AMB_RS03680 0.64 -1.8
777,211 - AMB_RS03680 0.64 -1.5
777,304 - AMB_RS03680 0.72 +0.1
777,337 + AMB_RS03680 0.74 +0.5
777,337 + AMB_RS03680 0.74 +0.4
777,338 - AMB_RS03680 0.74 -3.6
777,338 - AMB_RS03680 0.74 +0.6
777,338 - AMB_RS03680 0.74 -3.6
777,400 - AMB_RS03680 0.80 -0.7
777,400 - AMB_RS03680 0.80 +0.0
777,400 - AMB_RS03680 0.80 -0.4
777,400 - AMB_RS03680 0.80 +0.0

Or see this region's nucleotide sequence