Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03630 and AMB_RS03635 are separated by 147 nucleotides AMB_RS03635 and AMB_RS03640 overlap by 20 nucleotides
AMB_RS03630: AMB_RS03630 - hypothetical protein, at 764,099 to 765,715
_RS03630
AMB_RS03635: AMB_RS03635 - tetratricopeptide repeat protein, at 765,863 to 768,139
_RS03635
AMB_RS03640: AMB_RS03640 - CoA transferase, at 768,120 to 769,226
_RS03640
Position (kb) 765
766
767
768
769 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 765.020 kb on + strand, within AMB_RS03630 at 765.030 kb on + strand, within AMB_RS03630 at 765.031 kb on - strand, within AMB_RS03630 at 765.311 kb on - strand, within AMB_RS03630 at 765.311 kb on - strand, within AMB_RS03630 at 765.311 kb on - strand, within AMB_RS03630 at 765.395 kb on + strand, within AMB_RS03630 at 765.417 kb on + strand, within AMB_RS03630 at 765.589 kb on + strand at 765.698 kb on + strand at 765.698 kb on + strand at 765.741 kb on - strand at 765.772 kb on + strand at 765.773 kb on - strand at 765.807 kb on + strand at 765.807 kb on + strand at 765.808 kb on - strand at 765.808 kb on - strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.848 kb on - strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.949 kb on - strand at 766.019 kb on + strand at 766.019 kb on + strand at 766.019 kb on + strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.046 kb on + strand at 766.160 kb on + strand, within AMB_RS03635 at 766.160 kb on + strand, within AMB_RS03635 at 766.161 kb on - strand, within AMB_RS03635 at 766.161 kb on - strand, within AMB_RS03635 at 766.282 kb on + strand, within AMB_RS03635 at 766.282 kb on + strand, within AMB_RS03635 at 766.282 kb on + strand, within AMB_RS03635 at 766.386 kb on + strand, within AMB_RS03635 at 766.387 kb on - strand, within AMB_RS03635 at 766.387 kb on - strand, within AMB_RS03635 at 766.733 kb on + strand, within AMB_RS03635 at 766.733 kb on + strand, within AMB_RS03635 at 766.733 kb on + strand, within AMB_RS03635 at 766.733 kb on + strand, within AMB_RS03635 at 766.733 kb on + strand, within AMB_RS03635 at 766.734 kb on - strand, within AMB_RS03635 at 766.734 kb on - strand, within AMB_RS03635 at 766.734 kb on - strand, within AMB_RS03635 at 766.835 kb on + strand, within AMB_RS03635 at 766.835 kb on + strand, within AMB_RS03635 at 766.835 kb on + strand, within AMB_RS03635 at 766.836 kb on - strand, within AMB_RS03635 at 766.937 kb on + strand, within AMB_RS03635 at 766.937 kb on + strand, within AMB_RS03635 at 767.105 kb on + strand, within AMB_RS03635 at 767.105 kb on + strand, within AMB_RS03635 at 767.243 kb on + strand, within AMB_RS03635 at 767.575 kb on + strand, within AMB_RS03635 at 767.575 kb on + strand, within AMB_RS03635 at 767.575 kb on + strand, within AMB_RS03635 at 767.576 kb on - strand, within AMB_RS03635 at 767.576 kb on - strand, within AMB_RS03635 at 767.576 kb on - strand, within AMB_RS03635 at 767.594 kb on + strand, within AMB_RS03635 at 767.595 kb on - strand, within AMB_RS03635 at 768.032 kb on + strand at 768.517 kb on + strand, within AMB_RS03640 at 768.517 kb on + strand, within AMB_RS03640 at 768.517 kb on + strand, within AMB_RS03640 at 768.518 kb on - strand, within AMB_RS03640 at 768.518 kb on - strand, within AMB_RS03640 at 768.518 kb on - strand, within AMB_RS03640 at 768.526 kb on + strand, within AMB_RS03640 at 768.527 kb on - strand, within AMB_RS03640 at 768.527 kb on - strand, within AMB_RS03640 at 768.527 kb on - strand, within AMB_RS03640 at 768.676 kb on - strand, within AMB_RS03640 at 768.799 kb on + strand, within AMB_RS03640 at 768.799 kb on + strand, within AMB_RS03640 at 768.799 kb on + strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.848 kb on - strand, within AMB_RS03640 at 769.048 kb on + strand, within AMB_RS03640 at 769.048 kb on + strand, within AMB_RS03640 at 769.048 kb on + strand, within AMB_RS03640 at 769.049 kb on - strand, within AMB_RS03640 at 769.049 kb on - strand, within AMB_RS03640
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 765,020 + AMB_RS03630 0.57 -2.4 765,030 + AMB_RS03630 0.58 -4.1 765,031 - AMB_RS03630 0.58 -0.3 765,311 - AMB_RS03630 0.75 +0.7 765,311 - AMB_RS03630 0.75 -0.0 765,311 - AMB_RS03630 0.75 +0.8 765,395 + AMB_RS03630 0.80 -1.5 765,417 + AMB_RS03630 0.82 -4.4 765,589 + -1.7 765,698 + -1.7 765,698 + -1.2 765,741 - -2.8 765,772 + -2.5 765,773 - -0.9 765,807 + -1.7 765,807 + -0.7 765,808 - -3.2 765,808 - +2.1 765,831 + -3.8 765,831 + +0.7 765,831 + -0.3 765,831 + +0.7 765,831 + -0.7 765,831 + -0.8 765,831 + -0.9 765,831 + -3.0 765,831 + +0.7 765,831 + +0.2 765,831 + +0.0 765,831 + -2.0 765,831 + -0.2 765,831 + +0.4 765,831 + -0.0 765,832 - -2.2 765,832 - +3.4 765,832 - -3.2 765,832 - +0.8 765,832 - -2.8 765,832 - -1.7 765,832 - +0.5 765,832 - -0.5 765,832 - -0.1 765,832 - -0.3 765,832 - -3.2 765,832 - -1.9 765,832 - -2.8 765,832 - -0.7 765,832 - -5.3 765,848 - +0.4 765,870 + -0.1 765,870 + -0.0 765,870 + -0.7 765,870 + +0.1 765,870 + +1.7 765,870 + -2.3 765,871 - -0.0 765,871 - +1.1 765,871 - -2.0 765,871 - -2.4 765,871 - -1.5 765,871 - -4.7 765,948 + -0.3 765,948 + +0.2 765,948 + -0.8 765,948 + -0.9 765,948 + -0.4 765,949 - -1.8 766,019 + -0.7 766,019 + +1.5 766,019 + +0.6 766,020 - -1.2 766,020 - +0.1 766,020 - -2.4 766,020 - +0.6 766,020 - -0.3 766,020 - -1.0 766,046 + -0.7 766,160 + AMB_RS03635 0.13 -2.7 766,160 + AMB_RS03635 0.13 -0.9 766,161 - AMB_RS03635 0.13 +0.1 766,161 - AMB_RS03635 0.13 -1.7 766,282 + AMB_RS03635 0.18 -0.1 766,282 + AMB_RS03635 0.18 -1.3 766,282 + AMB_RS03635 0.18 -2.0 766,386 + AMB_RS03635 0.23 -1.7 766,387 - AMB_RS03635 0.23 +0.1 766,387 - AMB_RS03635 0.23 -0.2 766,733 + AMB_RS03635 0.38 -3.4 766,733 + AMB_RS03635 0.38 -1.3 766,733 + AMB_RS03635 0.38 -4.6 766,733 + AMB_RS03635 0.38 -1.1 766,733 + AMB_RS03635 0.38 -2.5 766,734 - AMB_RS03635 0.38 -0.0 766,734 - AMB_RS03635 0.38 -0.1 766,734 - AMB_RS03635 0.38 -0.0 766,835 + AMB_RS03635 0.43 -0.2 766,835 + AMB_RS03635 0.43 +0.4 766,835 + AMB_RS03635 0.43 -1.7 766,836 - AMB_RS03635 0.43 +0.5 766,937 + AMB_RS03635 0.47 +0.1 766,937 + AMB_RS03635 0.47 -2.7 767,105 + AMB_RS03635 0.55 -0.7 767,105 + AMB_RS03635 0.55 -0.3 767,243 + AMB_RS03635 0.61 -1.3 767,575 + AMB_RS03635 0.75 -0.3 767,575 + AMB_RS03635 0.75 -0.9 767,575 + AMB_RS03635 0.75 -2.6 767,576 - AMB_RS03635 0.75 -1.3 767,576 - AMB_RS03635 0.75 +0.1 767,576 - AMB_RS03635 0.75 -1.4 767,594 + AMB_RS03635 0.76 -0.5 767,595 - AMB_RS03635 0.76 -0.7 768,032 + -1.3 768,517 + AMB_RS03640 0.36 -2.5 768,517 + AMB_RS03640 0.36 -2.0 768,517 + AMB_RS03640 0.36 +0.2 768,518 - AMB_RS03640 0.36 -3.1 768,518 - AMB_RS03640 0.36 +0.6 768,518 - AMB_RS03640 0.36 +1.8 768,526 + AMB_RS03640 0.37 +1.8 768,527 - AMB_RS03640 0.37 -1.1 768,527 - AMB_RS03640 0.37 -0.6 768,527 - AMB_RS03640 0.37 -3.3 768,676 - AMB_RS03640 0.50 +0.1 768,799 + AMB_RS03640 0.61 -1.2 768,799 + AMB_RS03640 0.61 -1.2 768,799 + AMB_RS03640 0.61 -0.3 768,800 - AMB_RS03640 0.61 -2.3 768,800 - AMB_RS03640 0.61 -0.7 768,800 - AMB_RS03640 0.61 -2.3 768,800 - AMB_RS03640 0.61 +0.1 768,800 - AMB_RS03640 0.61 -0.3 768,800 - AMB_RS03640 0.61 +1.0 768,800 - AMB_RS03640 0.61 -0.9 768,848 - AMB_RS03640 0.66 +0.2 769,048 + AMB_RS03640 0.84 -4.3 769,048 + AMB_RS03640 0.84 -0.3 769,048 + AMB_RS03640 0.84 -0.5 769,049 - AMB_RS03640 0.84 +0.3 769,049 - AMB_RS03640 0.84 -0.6
Or see this region's nucleotide sequence