Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03350

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03345 and AMB_RS03350 overlap by 8 nucleotidesAMB_RS03350 and AMB_RS23900 are separated by 125 nucleotidesAMB_RS23900 and AMB_RS03355 are separated by 18 nucleotides AMB_RS03345: AMB_RS03345 - hypothetical protein, at 697,857 to 701,930 _RS03345 AMB_RS03350: AMB_RS03350 - DNA-binding response regulator, at 701,923 to 702,675 _RS03350 AMB_RS23900: AMB_RS23900 - PilZ domain-containing protein, at 702,801 to 703,151 _RS23900 AMB_RS03355: AMB_RS03355 - two-component system response regulator, at 703,170 to 704,333 _RS03355 Position (kb) 701 702 703Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 701.001 kb on - strand, within AMB_RS03345at 701.001 kb on - strand, within AMB_RS03345at 701.016 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.067 kb on - strand, within AMB_RS03345at 701.067 kb on - strand, within AMB_RS03345at 701.067 kb on - strand, within AMB_RS03345at 701.348 kb on + strand, within AMB_RS03345at 701.349 kb on - strand, within AMB_RS03345at 701.624 kb on + strandat 701.928 kb on + strandat 701.929 kb on - strandat 701.929 kb on - strandat 701.929 kb on - strandat 702.093 kb on - strand, within AMB_RS03350at 702.101 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.328 kb on + strand, within AMB_RS03350at 702.328 kb on + strand, within AMB_RS03350at 702.332 kb on + strand, within AMB_RS03350at 702.332 kb on + strand, within AMB_RS03350at 702.333 kb on - strand, within AMB_RS03350at 702.566 kb on + strand, within AMB_RS03350at 702.566 kb on + strand, within AMB_RS03350at 702.567 kb on - strand, within AMB_RS03350at 702.567 kb on - strand, within AMB_RS03350at 702.755 kb on - strandat 702.872 kb on + strand, within AMB_RS23900at 702.875 kb on - strand, within AMB_RS23900at 703.037 kb on + strand, within AMB_RS23900at 703.038 kb on - strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.074 kb on - strand, within AMB_RS23900at 703.074 kb on - strand, within AMB_RS23900at 703.303 kb on + strand, within AMB_RS03355at 703.303 kb on + strand, within AMB_RS03355at 703.303 kb on + strand, within AMB_RS03355at 703.303 kb on + strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.397 kb on - strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.651 kb on - strand, within AMB_RS03355

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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701,001 - AMB_RS03345 0.77 +0.1
701,001 - AMB_RS03345 0.77 +0.1
701,016 + AMB_RS03345 0.78 +0.1
701,066 + AMB_RS03345 0.79 +0.4
701,066 + AMB_RS03345 0.79 -3.1
701,066 + AMB_RS03345 0.79 -2.2
701,066 + AMB_RS03345 0.79 +1.7
701,067 - AMB_RS03345 0.79 -0.3
701,067 - AMB_RS03345 0.79 +0.1
701,067 - AMB_RS03345 0.79 -4.5
701,348 + AMB_RS03345 0.86 -0.4
701,349 - AMB_RS03345 0.86 -3.6
701,624 + -1.3
701,928 + -1.1
701,929 - -1.9
701,929 - +0.0
701,929 - -0.3
702,093 - AMB_RS03350 0.23 +0.7
702,101 + AMB_RS03350 0.24 -5.2
702,213 + AMB_RS03350 0.39 -0.1
702,213 + AMB_RS03350 0.39 -0.1
702,213 + AMB_RS03350 0.39 +0.2
702,213 + AMB_RS03350 0.39 -4.2
702,214 - AMB_RS03350 0.39 -1.5
702,214 - AMB_RS03350 0.39 -0.6
702,214 - AMB_RS03350 0.39 -1.1
702,214 - AMB_RS03350 0.39 -3.2
702,215 + AMB_RS03350 0.39 +1.1
702,215 + AMB_RS03350 0.39 -1.1
702,215 + AMB_RS03350 0.39 +0.6
702,215 + AMB_RS03350 0.39 -0.3
702,215 + AMB_RS03350 0.39 -0.3
702,215 + AMB_RS03350 0.39 -0.3
702,215 + AMB_RS03350 0.39 -2.1
702,215 + AMB_RS03350 0.39 -0.4
702,215 + AMB_RS03350 0.39 -1.9
702,215 + AMB_RS03350 0.39 +0.2
702,215 + AMB_RS03350 0.39 +1.1
702,215 + AMB_RS03350 0.39 +0.1
702,215 + AMB_RS03350 0.39 +0.6
702,215 + AMB_RS03350 0.39 +0.1
702,215 + AMB_RS03350 0.39 -1.3
702,216 - AMB_RS03350 0.39 -0.9
702,216 - AMB_RS03350 0.39 +1.7
702,216 - AMB_RS03350 0.39 -0.5
702,216 - AMB_RS03350 0.39 -1.2
702,328 + AMB_RS03350 0.54 +1.7
702,328 + AMB_RS03350 0.54 -0.9
702,332 + AMB_RS03350 0.54 -2.4
702,332 + AMB_RS03350 0.54 -0.5
702,333 - AMB_RS03350 0.54 +0.1
702,566 + AMB_RS03350 0.85 -1.8
702,566 + AMB_RS03350 0.85 -1.9
702,567 - AMB_RS03350 0.86 +1.2
702,567 - AMB_RS03350 0.86 -0.8
702,755 - -1.3
702,872 + AMB_RS23900 0.20 -0.9
702,875 - AMB_RS23900 0.21 -2.9
703,037 + AMB_RS23900 0.67 -1.8
703,038 - AMB_RS23900 0.68 -1.1
703,073 + AMB_RS23900 0.77 -1.1
703,073 + AMB_RS23900 0.77 -0.9
703,073 + AMB_RS23900 0.77 +0.3
703,073 + AMB_RS23900 0.77 +0.1
703,074 - AMB_RS23900 0.78 -0.3
703,074 - AMB_RS23900 0.78 +0.5
703,303 + AMB_RS03355 0.11 -1.8
703,303 + AMB_RS03355 0.11 -0.0
703,303 + AMB_RS03355 0.11 -0.3
703,303 + AMB_RS03355 0.11 -4.2
703,304 - AMB_RS03355 0.12 -1.6
703,304 - AMB_RS03355 0.12 -1.1
703,304 - AMB_RS03355 0.12 -0.3
703,304 - AMB_RS03355 0.12 -0.6
703,397 - AMB_RS03355 0.20 -2.0
703,475 + AMB_RS03355 0.26 -0.6
703,475 + AMB_RS03355 0.26 -3.3
703,475 + AMB_RS03355 0.26 -1.9
703,476 - AMB_RS03355 0.26 -3.9
703,476 - AMB_RS03355 0.26 -0.3
703,476 - AMB_RS03355 0.26 -1.5
703,476 - AMB_RS03355 0.26 -2.2
703,476 - AMB_RS03355 0.26 -0.6
703,477 + AMB_RS03355 0.26 -0.6
703,477 + AMB_RS03355 0.26 +2.1
703,477 + AMB_RS03355 0.26 -3.0
703,477 + AMB_RS03355 0.26 -0.4
703,478 - AMB_RS03355 0.26 -0.6
703,478 - AMB_RS03355 0.26 +0.1
703,478 - AMB_RS03355 0.26 -2.4
703,478 - AMB_RS03355 0.26 +0.1
703,478 - AMB_RS03355 0.26 -0.3
703,478 - AMB_RS03355 0.26 +0.6
703,651 - AMB_RS03355 0.41 +1.9

Or see this region's nucleotide sequence