Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03215 and AMB_RS03220 are separated by 19 nucleotides AMB_RS03220 and AMB_RS03225 are separated by 62 nucleotides AMB_RS03225 and AMB_RS03230 are separated by 287 nucleotides
AMB_RS03215: AMB_RS03215 - alpha/beta hydrolase, at 671,095 to 672,141
_RS03215
AMB_RS03220: AMB_RS03220 - two-component sensor histidine kinase, at 672,161 to 674,695
_RS03220
AMB_RS03225: AMB_RS03225 - DedA family protein, at 674,758 to 675,336
_RS03225
AMB_RS03230: AMB_RS03230 - hypothetical protein, at 675,624 to 676,058
_RS03230
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 671.202 kb on - strand, within AMB_RS03215 at 671.287 kb on + strand, within AMB_RS03215 at 671.287 kb on + strand, within AMB_RS03215 at 671.287 kb on + strand, within AMB_RS03215 at 671.601 kb on - strand, within AMB_RS03215 at 671.643 kb on - strand, within AMB_RS03215 at 671.822 kb on + strand, within AMB_RS03215 at 671.823 kb on - strand, within AMB_RS03215 at 671.841 kb on + strand, within AMB_RS03215 at 671.842 kb on - strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.843 kb on + strand, within AMB_RS03215 at 671.844 kb on - strand, within AMB_RS03215 at 671.844 kb on - strand, within AMB_RS03215 at 671.924 kb on + strand, within AMB_RS03215 at 671.925 kb on - strand, within AMB_RS03215 at 671.972 kb on + strand, within AMB_RS03215 at 671.973 kb on - strand, within AMB_RS03215 at 671.973 kb on - strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.002 kb on + strand, within AMB_RS03215 at 672.191 kb on + strand at 672.192 kb on - strand at 672.206 kb on - strand at 672.741 kb on + strand, within AMB_RS03220 at 672.742 kb on - strand, within AMB_RS03220 at 672.742 kb on - strand, within AMB_RS03220 at 673.191 kb on + strand, within AMB_RS03220 at 673.191 kb on + strand, within AMB_RS03220 at 673.288 kb on + strand, within AMB_RS03220 at 673.332 kb on + strand, within AMB_RS03220 at 673.333 kb on - strand, within AMB_RS03220 at 673.353 kb on + strand, within AMB_RS03220 at 673.353 kb on + strand, within AMB_RS03220 at 673.461 kb on + strand, within AMB_RS03220 at 673.462 kb on - strand, within AMB_RS03220 at 673.527 kb on + strand, within AMB_RS03220 at 673.528 kb on - strand, within AMB_RS03220 at 673.528 kb on - strand, within AMB_RS03220 at 673.723 kb on - strand, within AMB_RS03220 at 673.723 kb on - strand, within AMB_RS03220 at 673.950 kb on + strand, within AMB_RS03220 at 673.950 kb on + strand, within AMB_RS03220 at 673.950 kb on + strand, within AMB_RS03220 at 673.951 kb on - strand, within AMB_RS03220 at 673.951 kb on - strand, within AMB_RS03220 at 673.951 kb on - strand, within AMB_RS03220 at 674.012 kb on + strand, within AMB_RS03220 at 674.012 kb on + strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.383 kb on - strand, within AMB_RS03220 at 674.726 kb on + strand at 674.727 kb on - strand at 675.335 kb on - strand at 675.335 kb on - strand at 675.346 kb on + strand at 675.350 kb on + strand at 675.350 kb on + strand at 675.351 kb on - strand at 675.351 kb on - strand at 675.360 kb on + strand at 675.360 kb on + strand at 675.411 kb on + strand at 675.417 kb on - strand at 675.543 kb on - strand at 675.615 kb on + strand at 675.615 kb on + strand at 675.615 kb on + strand at 675.616 kb on - strand at 675.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 671,202 - AMB_RS03215 0.10 -0.6 671,287 + AMB_RS03215 0.18 -5.2 671,287 + AMB_RS03215 0.18 -3.7 671,287 + AMB_RS03215 0.18 -0.9 671,601 - AMB_RS03215 0.48 -2.7 671,643 - AMB_RS03215 0.52 -1.5 671,822 + AMB_RS03215 0.69 -2.6 671,823 - AMB_RS03215 0.70 +0.5 671,841 + AMB_RS03215 0.71 -0.9 671,842 - AMB_RS03215 0.71 -1.1 671,843 + AMB_RS03215 0.71 +0.1 671,843 + AMB_RS03215 0.71 -1.3 671,843 + AMB_RS03215 0.71 -2.0 671,843 + AMB_RS03215 0.71 -1.9 671,844 - AMB_RS03215 0.72 -1.9 671,844 - AMB_RS03215 0.72 -0.7 671,924 + AMB_RS03215 0.79 +0.6 671,925 - AMB_RS03215 0.79 -2.5 671,972 + AMB_RS03215 0.84 -3.6 671,973 - AMB_RS03215 0.84 -1.5 671,973 - AMB_RS03215 0.84 -0.3 672,002 + AMB_RS03215 0.87 -1.1 672,002 + AMB_RS03215 0.87 +0.2 672,002 + AMB_RS03215 0.87 -1.3 672,002 + AMB_RS03215 0.87 -2.3 672,002 + AMB_RS03215 0.87 -0.3 672,191 + -1.3 672,192 - -1.2 672,206 - -0.4 672,741 + AMB_RS03220 0.23 -1.1 672,742 - AMB_RS03220 0.23 -2.0 672,742 - AMB_RS03220 0.23 -1.1 673,191 + AMB_RS03220 0.41 +0.7 673,191 + AMB_RS03220 0.41 -0.1 673,288 + AMB_RS03220 0.44 +0.1 673,332 + AMB_RS03220 0.46 -1.6 673,333 - AMB_RS03220 0.46 +0.8 673,353 + AMB_RS03220 0.47 -0.9 673,353 + AMB_RS03220 0.47 -2.0 673,461 + AMB_RS03220 0.51 -0.7 673,462 - AMB_RS03220 0.51 -1.6 673,527 + AMB_RS03220 0.54 -1.1 673,528 - AMB_RS03220 0.54 +0.1 673,528 - AMB_RS03220 0.54 -3.3 673,723 - AMB_RS03220 0.62 +0.1 673,723 - AMB_RS03220 0.62 -0.9 673,950 + AMB_RS03220 0.71 +1.7 673,950 + AMB_RS03220 0.71 +0.7 673,950 + AMB_RS03220 0.71 +0.3 673,951 - AMB_RS03220 0.71 -2.6 673,951 - AMB_RS03220 0.71 +1.4 673,951 - AMB_RS03220 0.71 +0.3 674,012 + AMB_RS03220 0.73 -1.1 674,012 + AMB_RS03220 0.73 -3.1 674,013 - AMB_RS03220 0.73 -0.9 674,013 - AMB_RS03220 0.73 -0.9 674,013 - AMB_RS03220 0.73 -5.1 674,013 - AMB_RS03220 0.73 -0.2 674,013 - AMB_RS03220 0.73 -4.5 674,383 - AMB_RS03220 0.88 -0.9 674,726 + +0.8 674,727 - -1.9 675,335 - -0.5 675,335 - -1.5 675,346 + -0.6 675,350 + +1.5 675,350 + -1.5 675,351 - +0.1 675,351 - -2.4 675,360 + -3.5 675,360 + -1.8 675,411 + -3.1 675,417 - -1.2 675,543 - -0.3 675,615 + +0.6 675,615 + +1.7 675,615 + -2.1 675,616 - -1.1 675,616 - +0.1
Or see this region's nucleotide sequence