Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02985 and AMB_RS02990 are separated by 114 nucleotides AMB_RS02990 and AMB_RS02995 are separated by 9 nucleotides AMB_RS02995 and AMB_RS03000 are separated by 83 nucleotides
AMB_RS02985: AMB_RS02985 - UTP--glucose-1-phosphate uridylyltransferase, at 625,363 to 626,238
_RS02985
AMB_RS02990: AMB_RS02990 - hypothetical protein, at 626,353 to 626,838
_RS02990
AMB_RS02995: AMB_RS02995 - anti-sigma factor antagonist, at 626,848 to 627,246
_RS02995
AMB_RS03000: AMB_RS03000 - acetoacetate--CoA ligase, at 627,330 to 629,288
_RS03000
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 626.341 kb on + strand at 626.362 kb on + strand at 626.362 kb on + strand at 626.363 kb on - strand at 626.849 kb on + strand at 626.850 kb on - strand at 627.084 kb on + strand, within AMB_RS02995 at 627.084 kb on + strand, within AMB_RS02995 at 627.084 kb on + strand, within AMB_RS02995 at 627.085 kb on - strand, within AMB_RS02995 at 627.086 kb on + strand, within AMB_RS02995 at 627.156 kb on - strand, within AMB_RS02995 at 627.187 kb on + strand, within AMB_RS02995 at 627.187 kb on + strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.204 kb on + strand, within AMB_RS02995 at 627.205 kb on - strand, within AMB_RS02995 at 627.235 kb on + strand at 627.246 kb on + strand at 627.435 kb on + strand at 627.435 kb on + strand at 627.436 kb on - strand at 627.436 kb on - strand at 627.436 kb on - strand at 627.766 kb on - strand, within AMB_RS03000 at 627.766 kb on - strand, within AMB_RS03000 at 627.766 kb on - strand, within AMB_RS03000 at 627.766 kb on - strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.919 kb on - strand, within AMB_RS03000 at 627.925 kb on - strand, within AMB_RS03000 at 628.011 kb on + strand, within AMB_RS03000 at 628.011 kb on + strand, within AMB_RS03000 at 628.012 kb on - strand, within AMB_RS03000 at 628.012 kb on - strand, within AMB_RS03000 at 628.014 kb on - strand, within AMB_RS03000 at 628.131 kb on + strand, within AMB_RS03000 at 628.131 kb on + strand, within AMB_RS03000 at 628.131 kb on + strand, within AMB_RS03000 at 628.132 kb on - strand, within AMB_RS03000 at 628.132 kb on - strand, within AMB_RS03000 at 628.132 kb on - strand, within AMB_RS03000 at 628.140 kb on + strand, within AMB_RS03000 at 628.140 kb on + strand, within AMB_RS03000 at 628.140 kb on + strand, within AMB_RS03000 at 628.141 kb on - strand, within AMB_RS03000 at 628.141 kb on - strand, within AMB_RS03000 at 628.141 kb on - strand, within AMB_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 626,341 + -2.6 626,362 + -1.4 626,362 + -1.1 626,363 - -0.6 626,849 + -0.4 626,850 - -2.8 627,084 + AMB_RS02995 0.59 +0.7 627,084 + AMB_RS02995 0.59 -0.9 627,084 + AMB_RS02995 0.59 -1.1 627,085 - AMB_RS02995 0.59 -1.1 627,086 + AMB_RS02995 0.60 +1.3 627,156 - AMB_RS02995 0.77 +2.2 627,187 + AMB_RS02995 0.85 +0.6 627,187 + AMB_RS02995 0.85 +0.7 627,188 - AMB_RS02995 0.85 -2.6 627,188 - AMB_RS02995 0.85 -0.6 627,188 - AMB_RS02995 0.85 -0.9 627,188 - AMB_RS02995 0.85 -2.9 627,192 + AMB_RS02995 0.86 -1.1 627,192 + AMB_RS02995 0.86 -0.3 627,192 + AMB_RS02995 0.86 +0.7 627,193 - AMB_RS02995 0.86 +0.2 627,193 - AMB_RS02995 0.86 -2.5 627,193 - AMB_RS02995 0.86 -1.3 627,193 - AMB_RS02995 0.86 -0.0 627,193 - AMB_RS02995 0.86 -0.6 627,204 + AMB_RS02995 0.89 -3.4 627,205 - AMB_RS02995 0.89 +0.3 627,235 + -2.3 627,246 + +0.9 627,435 + -0.9 627,435 + -1.6 627,436 - -1.0 627,436 - -2.6 627,436 - +0.4 627,766 - AMB_RS03000 0.22 -3.3 627,766 - AMB_RS03000 0.22 -1.6 627,766 - AMB_RS03000 0.22 +0.9 627,766 - AMB_RS03000 0.22 +0.8 627,918 + AMB_RS03000 0.30 -1.6 627,918 + AMB_RS03000 0.30 -1.9 627,918 + AMB_RS03000 0.30 +2.9 627,918 + AMB_RS03000 0.30 +0.7 627,919 - AMB_RS03000 0.30 +1.0 627,925 - AMB_RS03000 0.30 -0.1 628,011 + AMB_RS03000 0.35 -1.5 628,011 + AMB_RS03000 0.35 -1.6 628,012 - AMB_RS03000 0.35 -0.5 628,012 - AMB_RS03000 0.35 -0.9 628,014 - AMB_RS03000 0.35 -3.2 628,131 + AMB_RS03000 0.41 -0.3 628,131 + AMB_RS03000 0.41 -0.6 628,131 + AMB_RS03000 0.41 -1.5 628,132 - AMB_RS03000 0.41 +1.3 628,132 - AMB_RS03000 0.41 +0.1 628,132 - AMB_RS03000 0.41 +0.1 628,140 + AMB_RS03000 0.41 -1.5 628,140 + AMB_RS03000 0.41 -2.6 628,140 + AMB_RS03000 0.41 +1.0 628,141 - AMB_RS03000 0.41 -2.9 628,141 - AMB_RS03000 0.41 +0.4 628,141 - AMB_RS03000 0.41 +1.1
Or see this region's nucleotide sequence