Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02850 and AMB_RS02855 are separated by 192 nucleotides AMB_RS02855 and AMB_RS02860 are separated by 109 nucleotides AMB_RS02860 and AMB_RS02865 are separated by 16 nucleotides
AMB_RS02850: AMB_RS02850 - branched-chain amino acid aminotransferase, at 597,069 to 597,941
_RS02850
AMB_RS02855: AMB_RS02855 - methyl-accepting chemotaxis protein, at 598,134 to 599,798
_RS02855
AMB_RS02860: AMB_RS02860 - hypothetical protein, at 599,908 to 600,099
_RS02860
AMB_RS02865: AMB_RS02865 - response regulator, at 600,116 to 601,165
_RS02865
Position (kb) 598
599
600 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 597.943 kb on - strand at 597.946 kb on - strand at 597.993 kb on + strand at 598.018 kb on + strand at 598.139 kb on + strand at 598.139 kb on + strand at 598.140 kb on - strand at 598.140 kb on - strand at 598.140 kb on - strand at 598.140 kb on - strand at 598.161 kb on - strand at 598.161 kb on - strand at 598.225 kb on + strand at 598.225 kb on + strand at 598.226 kb on - strand at 598.311 kb on - strand, within AMB_RS02855 at 598.359 kb on + strand, within AMB_RS02855 at 598.406 kb on + strand, within AMB_RS02855 at 598.513 kb on - strand, within AMB_RS02855 at 598.513 kb on - strand, within AMB_RS02855 at 598.519 kb on - strand, within AMB_RS02855 at 598.808 kb on + strand, within AMB_RS02855 at 598.809 kb on - strand, within AMB_RS02855 at 598.809 kb on - strand, within AMB_RS02855 at 598.889 kb on + strand, within AMB_RS02855 at 598.889 kb on + strand, within AMB_RS02855 at 598.890 kb on - strand, within AMB_RS02855 at 598.890 kb on - strand, within AMB_RS02855 at 598.890 kb on - strand, within AMB_RS02855 at 598.890 kb on - strand, within AMB_RS02855 at 598.890 kb on - strand, within AMB_RS02855 at 599.475 kb on - strand, within AMB_RS02855 at 599.475 kb on - strand, within AMB_RS02855 at 599.475 kb on - strand, within AMB_RS02855 at 599.475 kb on - strand, within AMB_RS02855 at 599.541 kb on - strand, within AMB_RS02855 at 599.552 kb on + strand, within AMB_RS02855 at 599.553 kb on - strand, within AMB_RS02855 at 599.649 kb on + strand at 599.649 kb on + strand at 599.649 kb on + strand at 599.650 kb on - strand at 599.871 kb on + strand at 599.871 kb on + strand at 599.871 kb on + strand at 599.871 kb on + strand at 599.872 kb on - strand at 599.877 kb on + strand at 599.883 kb on + strand at 599.883 kb on + strand at 599.884 kb on - strand at 599.904 kb on - strand at 599.978 kb on - strand, within AMB_RS02860 at 599.999 kb on + strand, within AMB_RS02860 at 599.999 kb on + strand, within AMB_RS02860 at 600.000 kb on - strand, within AMB_RS02860 at 600.097 kb on + strand at 600.117 kb on + strand at 600.118 kb on - strand at 600.118 kb on - strand at 600.118 kb on - strand at 600.189 kb on - strand at 600.204 kb on + strand at 600.654 kb on + strand, within AMB_RS02865 at 600.654 kb on + strand, within AMB_RS02865 at 600.654 kb on + strand, within AMB_RS02865 at 600.655 kb on - strand, within AMB_RS02865 at 600.655 kb on - strand, within AMB_RS02865 at 600.772 kb on - strand, within AMB_RS02865 at 600.781 kb on + strand, within AMB_RS02865 at 600.782 kb on - strand, within AMB_RS02865
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 597,943 - -4.9 597,946 - -2.0 597,993 + -1.3 598,018 + +0.1 598,139 + -0.3 598,139 + -0.3 598,140 - -0.3 598,140 - -0.3 598,140 - -0.2 598,140 - -1.5 598,161 - -2.4 598,161 - -0.9 598,225 + -1.5 598,225 + +0.1 598,226 - -1.5 598,311 - AMB_RS02855 0.11 -2.3 598,359 + AMB_RS02855 0.14 -0.3 598,406 + AMB_RS02855 0.16 +0.7 598,513 - AMB_RS02855 0.23 +2.3 598,513 - AMB_RS02855 0.23 -5.0 598,519 - AMB_RS02855 0.23 -3.4 598,808 + AMB_RS02855 0.40 -1.1 598,809 - AMB_RS02855 0.41 -1.9 598,809 - AMB_RS02855 0.41 -0.2 598,889 + AMB_RS02855 0.45 -1.1 598,889 + AMB_RS02855 0.45 -0.9 598,890 - AMB_RS02855 0.45 -0.1 598,890 - AMB_RS02855 0.45 +0.5 598,890 - AMB_RS02855 0.45 +0.3 598,890 - AMB_RS02855 0.45 -4.9 598,890 - AMB_RS02855 0.45 -0.9 599,475 - AMB_RS02855 0.81 -1.3 599,475 - AMB_RS02855 0.81 +0.5 599,475 - AMB_RS02855 0.81 -0.6 599,475 - AMB_RS02855 0.81 -0.8 599,541 - AMB_RS02855 0.85 -1.5 599,552 + AMB_RS02855 0.85 -1.3 599,553 - AMB_RS02855 0.85 +1.5 599,649 + +0.1 599,649 + -1.6 599,649 + +1.4 599,650 - -2.2 599,871 + -4.7 599,871 + -4.6 599,871 + +0.5 599,871 + -1.5 599,872 - +0.3 599,877 + -1.9 599,883 + -1.9 599,883 + -1.0 599,884 - -1.8 599,904 - -0.1 599,978 - AMB_RS02860 0.36 -0.6 599,999 + AMB_RS02860 0.47 -0.6 599,999 + AMB_RS02860 0.47 -4.4 600,000 - AMB_RS02860 0.48 -0.9 600,097 + -1.1 600,117 + +0.3 600,118 - -0.3 600,118 - -1.1 600,118 - +1.7 600,189 - -2.6 600,204 + -0.3 600,654 + AMB_RS02865 0.51 -0.1 600,654 + AMB_RS02865 0.51 +0.3 600,654 + AMB_RS02865 0.51 -1.3 600,655 - AMB_RS02865 0.51 -2.3 600,655 - AMB_RS02865 0.51 -2.1 600,772 - AMB_RS02865 0.62 -0.4 600,781 + AMB_RS02865 0.63 -1.0 600,782 - AMB_RS02865 0.63 -1.6
Or see this region's nucleotide sequence