Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02790 and AMB_RS02795 are separated by 33 nucleotides AMB_RS02795 and AMB_RS02800 overlap by 4 nucleotides AMB_RS02800 and AMB_RS02805 are separated by 55 nucleotides
AMB_RS02790: AMB_RS02790 - outer membrane receptor protein, at 586,576 to 588,702
_RS02790
AMB_RS02795: AMB_RS02795 - histidine phosphatase family protein, at 588,736 to 589,347
_RS02795
AMB_RS02800: AMB_RS02800 - adenosylcobinamide-GDP ribazoletransferase, at 589,344 to 590,126
_RS02800
AMB_RS02805: AMB_RS02805 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 590,182 to 591,201
_RS02805
Position (kb) 588
589
590 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 587.791 kb on + strand, within AMB_RS02790 at 587.791 kb on + strand, within AMB_RS02790 at 587.791 kb on + strand, within AMB_RS02790 at 587.791 kb on + strand, within AMB_RS02790 at 587.926 kb on + strand, within AMB_RS02790 at 587.965 kb on + strand, within AMB_RS02790 at 587.965 kb on + strand, within AMB_RS02790 at 587.965 kb on + strand, within AMB_RS02790 at 587.966 kb on - strand, within AMB_RS02790 at 587.966 kb on - strand, within AMB_RS02790 at 588.028 kb on + strand, within AMB_RS02790 at 588.029 kb on - strand, within AMB_RS02790 at 588.029 kb on - strand, within AMB_RS02790 at 588.066 kb on + strand, within AMB_RS02790 at 588.066 kb on + strand, within AMB_RS02790 at 588.067 kb on - strand, within AMB_RS02790 at 588.067 kb on - strand, within AMB_RS02790 at 588.075 kb on + strand, within AMB_RS02790 at 588.075 kb on + strand, within AMB_RS02790 at 588.076 kb on - strand, within AMB_RS02790 at 588.134 kb on - strand, within AMB_RS02790 at 588.134 kb on - strand, within AMB_RS02790 at 588.142 kb on + strand, within AMB_RS02790 at 588.142 kb on + strand, within AMB_RS02790 at 588.142 kb on + strand, within AMB_RS02790 at 588.142 kb on + strand, within AMB_RS02790 at 588.142 kb on + strand, within AMB_RS02790 at 588.143 kb on - strand, within AMB_RS02790 at 588.154 kb on + strand, within AMB_RS02790 at 588.154 kb on + strand, within AMB_RS02790 at 588.154 kb on + strand, within AMB_RS02790 at 588.154 kb on + strand, within AMB_RS02790 at 588.154 kb on + strand, within AMB_RS02790 at 588.154 kb on + strand, within AMB_RS02790 at 588.155 kb on - strand, within AMB_RS02790 at 588.156 kb on + strand, within AMB_RS02790 at 588.177 kb on + strand, within AMB_RS02790 at 588.361 kb on + strand, within AMB_RS02790 at 588.361 kb on + strand, within AMB_RS02790 at 588.361 kb on + strand, within AMB_RS02790 at 588.361 kb on + strand, within AMB_RS02790 at 588.361 kb on + strand, within AMB_RS02790 at 588.361 kb on + strand, within AMB_RS02790 at 588.361 kb on + strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.362 kb on - strand, within AMB_RS02790 at 588.523 kb on + strand at 588.580 kb on + strand at 588.581 kb on - strand at 588.583 kb on + strand at 588.583 kb on + strand at 588.583 kb on + strand at 588.583 kb on + strand at 588.583 kb on + strand at 588.584 kb on - strand at 588.584 kb on - strand at 588.584 kb on - strand at 588.608 kb on - strand at 588.743 kb on + strand at 588.744 kb on - strand at 589.353 kb on - strand at 589.353 kb on - strand at 590.139 kb on + strand at 590.140 kb on - strand at 590.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 587,791 + AMB_RS02790 0.57 +0.1 587,791 + AMB_RS02790 0.57 -1.3 587,791 + AMB_RS02790 0.57 -1.3 587,791 + AMB_RS02790 0.57 -0.3 587,926 + AMB_RS02790 0.63 -1.3 587,965 + AMB_RS02790 0.65 -0.3 587,965 + AMB_RS02790 0.65 -2.8 587,965 + AMB_RS02790 0.65 +1.2 587,966 - AMB_RS02790 0.65 +0.2 587,966 - AMB_RS02790 0.65 -1.1 588,028 + AMB_RS02790 0.68 -1.3 588,029 - AMB_RS02790 0.68 -0.3 588,029 - AMB_RS02790 0.68 -0.6 588,066 + AMB_RS02790 0.70 -0.3 588,066 + AMB_RS02790 0.70 -0.3 588,067 - AMB_RS02790 0.70 -0.8 588,067 - AMB_RS02790 0.70 +0.1 588,075 + AMB_RS02790 0.70 -1.8 588,075 + AMB_RS02790 0.70 -4.3 588,076 - AMB_RS02790 0.71 +0.1 588,134 - AMB_RS02790 0.73 +1.1 588,134 - AMB_RS02790 0.73 -1.3 588,142 + AMB_RS02790 0.74 +0.1 588,142 + AMB_RS02790 0.74 -0.6 588,142 + AMB_RS02790 0.74 -2.3 588,142 + AMB_RS02790 0.74 -2.6 588,142 + AMB_RS02790 0.74 -2.8 588,143 - AMB_RS02790 0.74 -2.3 588,154 + AMB_RS02790 0.74 -3.7 588,154 + AMB_RS02790 0.74 -0.8 588,154 + AMB_RS02790 0.74 -0.9 588,154 + AMB_RS02790 0.74 -0.5 588,154 + AMB_RS02790 0.74 -0.2 588,154 + AMB_RS02790 0.74 +0.1 588,155 - AMB_RS02790 0.74 -0.4 588,156 + AMB_RS02790 0.74 -1.3 588,177 + AMB_RS02790 0.75 -0.6 588,361 + AMB_RS02790 0.84 -0.6 588,361 + AMB_RS02790 0.84 -2.3 588,361 + AMB_RS02790 0.84 +0.1 588,361 + AMB_RS02790 0.84 -0.6 588,361 + AMB_RS02790 0.84 -0.3 588,361 + AMB_RS02790 0.84 -1.6 588,361 + AMB_RS02790 0.84 -0.8 588,362 - AMB_RS02790 0.84 +0.0 588,362 - AMB_RS02790 0.84 -0.9 588,362 - AMB_RS02790 0.84 +0.1 588,362 - AMB_RS02790 0.84 -0.6 588,362 - AMB_RS02790 0.84 -0.6 588,362 - AMB_RS02790 0.84 -0.9 588,362 - AMB_RS02790 0.84 -1.2 588,362 - AMB_RS02790 0.84 -1.5 588,523 + +0.4 588,580 + +1.9 588,581 - +1.7 588,583 + -0.3 588,583 + -0.3 588,583 + -0.3 588,583 + -1.5 588,583 + -0.9 588,584 - -0.2 588,584 - -0.6 588,584 - -3.1 588,608 - -0.9 588,743 + -1.5 588,744 - -0.9 589,353 - -1.5 589,353 - -4.4 590,139 + +0.0 590,140 - -0.3 590,140 - +0.1
Or see this region's nucleotide sequence