Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02205

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02195 and AMB_RS02200 are separated by 19 nucleotidesAMB_RS02200 and AMB_RS02205 are separated by 61 nucleotidesAMB_RS02205 and AMB_RS02210 are separated by 164 nucleotidesAMB_RS02210 and AMB_RS02215 are separated by 7 nucleotides AMB_RS02195: AMB_RS02195 - branched-chain amino acid ABC transporter, at 463,311 to 465,560 _RS02195 AMB_RS02200: AMB_RS02200 - hypothetical protein, at 465,580 to 466,455 _RS02200 AMB_RS02205: AMB_RS02205 - membrane protein, at 466,517 to 467,116 _RS02205 AMB_RS02210: AMB_RS02210 - DUF2786 domain-containing protein, at 467,281 to 467,967 _RS02210 AMB_RS02215: AMB_RS02215 - hypothetical protein, at 467,975 to 468,859 _RS02215 Position (kb) 466 467 468Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 465.565 kb on + strandat 465.565 kb on + strandat 465.565 kb on + strandat 465.566 kb on - strandat 465.566 kb on - strandat 465.566 kb on - strandat 465.581 kb on + strandat 465.581 kb on + strandat 465.582 kb on - strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.660 kb on + strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.661 kb on - strandat 465.662 kb on + strandat 465.662 kb on + strandat 465.662 kb on + strandat 465.662 kb on + strandat 465.662 kb on + strandat 465.662 kb on + strandat 465.662 kb on + strandat 465.662 kb on + strandat 465.663 kb on - strandat 465.663 kb on - strandat 465.663 kb on - strandat 465.663 kb on - strandat 465.663 kb on - strandat 465.663 kb on - strandat 465.663 kb on - strandat 465.722 kb on + strand, within AMB_RS02200at 465.756 kb on - strand, within AMB_RS02200at 465.756 kb on - strand, within AMB_RS02200at 465.756 kb on - strand, within AMB_RS02200at 465.756 kb on - strand, within AMB_RS02200at 465.782 kb on + strand, within AMB_RS02200at 465.782 kb on + strand, within AMB_RS02200at 465.782 kb on + strand, within AMB_RS02200at 465.981 kb on - strand, within AMB_RS02200at 466.232 kb on + strand, within AMB_RS02200at 466.232 kb on + strand, within AMB_RS02200at 466.233 kb on - strand, within AMB_RS02200at 466.233 kb on - strand, within AMB_RS02200at 466.244 kb on + strand, within AMB_RS02200at 466.244 kb on + strand, within AMB_RS02200at 466.244 kb on + strand, within AMB_RS02200at 466.244 kb on + strand, within AMB_RS02200at 466.244 kb on + strand, within AMB_RS02200at 466.244 kb on + strand, within AMB_RS02200at 466.244 kb on + strand, within AMB_RS02200at 466.245 kb on - strand, within AMB_RS02200at 466.245 kb on - strand, within AMB_RS02200at 466.245 kb on - strand, within AMB_RS02200at 466.245 kb on - strand, within AMB_RS02200at 466.245 kb on - strand, within AMB_RS02200at 466.615 kb on - strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.990 kb on - strand, within AMB_RS02205at 466.990 kb on - strand, within AMB_RS02205at 466.990 kb on - strand, within AMB_RS02205at 466.992 kb on + strand, within AMB_RS02205at 466.992 kb on + strand, within AMB_RS02205at 466.993 kb on - strand, within AMB_RS02205at 467.020 kb on - strand, within AMB_RS02205at 467.020 kb on - strand, within AMB_RS02205at 467.020 kb on - strand, within AMB_RS02205at 467.100 kb on + strandat 467.100 kb on + strandat 467.101 kb on - strandat 467.101 kb on - strandat 467.101 kb on - strandat 467.119 kb on + strandat 467.228 kb on + strandat 467.229 kb on - strandat 467.270 kb on + strandat 467.271 kb on - strandat 467.273 kb on + strandat 467.405 kb on + strand, within AMB_RS02210at 467.405 kb on + strand, within AMB_RS02210at 467.406 kb on - strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.627 kb on + strand, within AMB_RS02210at 467.628 kb on - strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.675 kb on + strand, within AMB_RS02210at 467.675 kb on + strand, within AMB_RS02210at 467.676 kb on - strand, within AMB_RS02210at 467.676 kb on - strand, within AMB_RS02210at 467.676 kb on - strand, within AMB_RS02210

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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465,565 + +0.3
465,565 + -1.1
465,565 + -0.4
465,566 - -1.1
465,566 - -1.9
465,566 - -0.8
465,581 + -0.8
465,581 + -0.8
465,582 - -1.9
465,660 + +0.7
465,660 + -1.6
465,660 + -0.2
465,660 + -2.6
465,660 + -0.6
465,660 + -0.1
465,660 + -0.1
465,660 + -1.7
465,660 + -3.8
465,660 + -3.8
465,660 + -1.1
465,660 + -0.1
465,660 + -0.8
465,661 - -2.2
465,661 - -0.3
465,661 - -0.5
465,661 - -2.3
465,661 - +0.7
465,661 - -1.6
465,661 - -0.7
465,661 - -0.6
465,661 - +0.8
465,662 + -0.5
465,662 + -1.3
465,662 + -2.7
465,662 + +0.3
465,662 + -0.7
465,662 + +0.4
465,662 + -0.4
465,662 + -1.3
465,663 - -2.2
465,663 - +0.2
465,663 - -2.4
465,663 - -0.3
465,663 - -3.7
465,663 - +0.2
465,663 - -0.6
465,722 + AMB_RS02200 0.16 -0.2
465,756 - AMB_RS02200 0.20 -0.6
465,756 - AMB_RS02200 0.20 -0.8
465,756 - AMB_RS02200 0.20 -1.3
465,756 - AMB_RS02200 0.20 -0.3
465,782 + AMB_RS02200 0.23 -1.1
465,782 + AMB_RS02200 0.23 -0.2
465,782 + AMB_RS02200 0.23 +0.3
465,981 - AMB_RS02200 0.46 -1.1
466,232 + AMB_RS02200 0.74 -0.1
466,232 + AMB_RS02200 0.74 -0.8
466,233 - AMB_RS02200 0.75 -1.1
466,233 - AMB_RS02200 0.75 -2.4
466,244 + AMB_RS02200 0.76 -4.9
466,244 + AMB_RS02200 0.76 -0.2
466,244 + AMB_RS02200 0.76 -0.6
466,244 + AMB_RS02200 0.76 -0.9
466,244 + AMB_RS02200 0.76 -2.6
466,244 + AMB_RS02200 0.76 +0.4
466,244 + AMB_RS02200 0.76 -3.5
466,245 - AMB_RS02200 0.76 +0.2
466,245 - AMB_RS02200 0.76 +0.0
466,245 - AMB_RS02200 0.76 -3.9
466,245 - AMB_RS02200 0.76 -0.6
466,245 - AMB_RS02200 0.76 +1.2
466,615 - AMB_RS02205 0.16 +0.6
466,989 + AMB_RS02205 0.79 +0.7
466,989 + AMB_RS02205 0.79 -0.3
466,989 + AMB_RS02205 0.79 -0.6
466,989 + AMB_RS02205 0.79 +0.3
466,990 - AMB_RS02205 0.79 -3.9
466,990 - AMB_RS02205 0.79 -0.6
466,990 - AMB_RS02205 0.79 -0.1
466,992 + AMB_RS02205 0.79 -2.3
466,992 + AMB_RS02205 0.79 -0.7
466,993 - AMB_RS02205 0.79 -1.2
467,020 - AMB_RS02205 0.84 +0.7
467,020 - AMB_RS02205 0.84 -3.1
467,020 - AMB_RS02205 0.84 -0.8
467,100 + -0.6
467,100 + -0.7
467,101 - -3.9
467,101 - +4.0
467,101 - -0.6
467,119 + -1.4
467,228 + -3.0
467,229 - -1.6
467,270 + -0.6
467,271 - -1.4
467,273 + -4.5
467,405 + AMB_RS02210 0.18 +0.7
467,405 + AMB_RS02210 0.18 +0.7
467,406 - AMB_RS02210 0.18 +1.7
467,585 + AMB_RS02210 0.44 -0.3
467,585 + AMB_RS02210 0.44 -0.3
467,585 + AMB_RS02210 0.44 +0.7
467,585 + AMB_RS02210 0.44 +1.7
467,585 + AMB_RS02210 0.44 +1.7
467,585 + AMB_RS02210 0.44 -1.0
467,585 + AMB_RS02210 0.44 -0.5
467,585 + AMB_RS02210 0.44 +0.6
467,585 + AMB_RS02210 0.44 -1.8
467,586 - AMB_RS02210 0.44 -2.1
467,586 - AMB_RS02210 0.44 -0.5
467,586 - AMB_RS02210 0.44 -2.0
467,586 - AMB_RS02210 0.44 +0.7
467,586 - AMB_RS02210 0.44 -3.0
467,586 - AMB_RS02210 0.44 -0.1
467,627 + AMB_RS02210 0.50 -0.1
467,628 - AMB_RS02210 0.51 -0.4
467,633 + AMB_RS02210 0.51 -0.8
467,633 + AMB_RS02210 0.51 +1.7
467,633 + AMB_RS02210 0.51 +1.0
467,633 + AMB_RS02210 0.51 -4.0
467,633 + AMB_RS02210 0.51 +0.4
467,633 + AMB_RS02210 0.51 +0.4
467,633 + AMB_RS02210 0.51 -1.1
467,633 + AMB_RS02210 0.51 -0.3
467,633 + AMB_RS02210 0.51 -0.5
467,633 + AMB_RS02210 0.51 -0.0
467,633 + AMB_RS02210 0.51 -1.4
467,634 - AMB_RS02210 0.51 -1.4
467,634 - AMB_RS02210 0.51 +0.2
467,634 - AMB_RS02210 0.51 +0.2
467,634 - AMB_RS02210 0.51 -4.3
467,675 + AMB_RS02210 0.57 -2.3
467,675 + AMB_RS02210 0.57 -0.8
467,676 - AMB_RS02210 0.57 +0.8
467,676 - AMB_RS02210 0.57 -0.5
467,676 - AMB_RS02210 0.57 +0.2

Or see this region's nucleotide sequence