Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02150 and AMB_RS02155 are separated by 73 nucleotides AMB_RS02155 and AMB_RS02160 are separated by 181 nucleotides AMB_RS02160 and AMB_RS02165 are separated by 148 nucleotides AMB_RS02165 and AMB_RS02170 are separated by 221 nucleotides
AMB_RS02150: AMB_RS02150 - hypothetical protein, at 453,045 to 454,085
_RS02150
AMB_RS02155: AMB_RS02155 - hypothetical protein, at 454,159 to 454,458
_RS02155
AMB_RS02160: AMB_RS02160 - tRNA-Ser, at 454,640 to 454,732
_RS02160
AMB_RS02165: AMB_RS02165 - hypothetical protein, at 454,881 to 455,144
_RS02165
AMB_RS02170: AMB_RS02170 - hypothetical protein, at 455,366 to 456,073
_RS02170
Position (kb) 454
455
456 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 453.888 kb on - strand, within AMB_RS02150 at 453.888 kb on - strand, within AMB_RS02150 at 453.902 kb on - strand, within AMB_RS02150 at 453.915 kb on + strand, within AMB_RS02150 at 453.916 kb on - strand, within AMB_RS02150 at 453.916 kb on - strand, within AMB_RS02150 at 454.086 kb on - strand at 454.086 kb on - strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.102 kb on + strand at 454.103 kb on - strand at 454.103 kb on - strand at 454.133 kb on + strand at 454.133 kb on + strand at 454.134 kb on - strand at 454.460 kb on + strand at 454.461 kb on - strand at 454.476 kb on - strand at 454.485 kb on - strand at 454.499 kb on + strand at 454.521 kb on - strand at 454.915 kb on + strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.027 kb on - strand, within AMB_RS02165 at 455.027 kb on - strand, within AMB_RS02165 at 455.125 kb on - strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.279 kb on - strand at 455.279 kb on - strand at 455.279 kb on - strand at 455.279 kb on - strand at 455.314 kb on + strand at 455.315 kb on - strand at 455.315 kb on - strand at 455.367 kb on + strand at 455.368 kb on - strand at 455.368 kb on - strand at 455.385 kb on - strand at 455.391 kb on - strand at 455.484 kb on + strand, within AMB_RS02170 at 455.484 kb on + strand, within AMB_RS02170 at 455.484 kb on + strand, within AMB_RS02170 at 455.484 kb on + strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.493 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.745 kb on + strand, within AMB_RS02170 at 455.746 kb on - strand, within AMB_RS02170 at 455.746 kb on - strand, within AMB_RS02170 at 455.875 kb on - strand, within AMB_RS02170 at 455.875 kb on - strand, within AMB_RS02170 at 456.099 kb on + strand at 456.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 453,888 - AMB_RS02150 0.81 -1.6 453,888 - AMB_RS02150 0.81 +0.1 453,902 - AMB_RS02150 0.82 -1.4 453,915 + AMB_RS02150 0.84 -0.3 453,916 - AMB_RS02150 0.84 -4.1 453,916 - AMB_RS02150 0.84 -5.0 454,086 - +0.7 454,086 - -0.6 454,092 + -3.4 454,092 + +0.7 454,092 + -2.2 454,092 + -1.4 454,092 + -1.1 454,092 + -0.3 454,093 - +0.6 454,093 - -0.3 454,093 - -1.4 454,093 - -3.6 454,093 - -0.6 454,093 - -0.6 454,093 - -0.3 454,093 - +0.7 454,097 + +0.9 454,097 + -5.1 454,097 + +0.2 454,097 + -0.9 454,097 + -0.4 454,097 + +0.1 454,097 + -2.0 454,097 + -0.3 454,097 + -0.6 454,098 - -0.1 454,098 - -0.6 454,098 - -0.3 454,098 - -0.6 454,098 - -0.6 454,102 + -0.6 454,103 - -1.5 454,103 - -3.8 454,133 + -1.7 454,133 + +0.7 454,134 - +2.9 454,460 + -0.2 454,461 - +0.7 454,476 - +1.7 454,485 - -2.5 454,499 + -1.3 454,521 - -0.6 454,915 + AMB_RS02165 0.13 -0.8 454,916 - AMB_RS02165 0.13 -1.4 454,916 - AMB_RS02165 0.13 +0.6 454,916 - AMB_RS02165 0.13 +0.2 454,916 - AMB_RS02165 0.13 -1.3 455,026 + AMB_RS02165 0.55 +1.7 455,026 + AMB_RS02165 0.55 -1.3 455,026 + AMB_RS02165 0.55 -2.2 455,026 + AMB_RS02165 0.55 -1.2 455,026 + AMB_RS02165 0.55 +1.2 455,027 - AMB_RS02165 0.55 -0.7 455,027 - AMB_RS02165 0.55 -2.4 455,125 - -0.6 455,278 + -2.4 455,278 + -0.6 455,278 + -2.0 455,278 + -0.2 455,278 + -2.3 455,278 + -0.4 455,278 + -0.6 455,279 - +0.7 455,279 - -0.3 455,279 - -0.6 455,279 - -5.3 455,314 + -0.6 455,315 - +0.7 455,315 - -4.7 455,367 + +0.1 455,368 - -0.3 455,368 - -1.7 455,385 - -0.6 455,391 - -0.9 455,484 + AMB_RS02170 0.17 -1.8 455,484 + AMB_RS02170 0.17 +0.2 455,484 + AMB_RS02170 0.17 -0.1 455,484 + AMB_RS02170 0.17 -0.6 455,485 - AMB_RS02170 0.17 +0.2 455,485 - AMB_RS02170 0.17 -1.6 455,485 - AMB_RS02170 0.17 +0.2 455,485 - AMB_RS02170 0.17 -1.0 455,493 + AMB_RS02170 0.18 +0.7 455,604 + AMB_RS02170 0.34 +0.9 455,604 + AMB_RS02170 0.34 -0.4 455,604 + AMB_RS02170 0.34 +0.2 455,604 + AMB_RS02170 0.34 -0.9 455,745 + AMB_RS02170 0.54 -2.6 455,746 - AMB_RS02170 0.54 -1.3 455,746 - AMB_RS02170 0.54 -0.3 455,875 - AMB_RS02170 0.72 -2.1 455,875 - AMB_RS02170 0.72 +0.2 456,099 + -0.9 456,126 + +0.6
Or see this region's nucleotide sequence