Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01845

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01840 and AMB_RS01845 are separated by 2 nucleotidesAMB_RS01845 and AMB_RS01850 overlap by 14 nucleotidesAMB_RS01850 and AMB_RS01855 are separated by 258 nucleotidesAMB_RS01855 and AMB_RS01860 are separated by 90 nucleotides AMB_RS01840: AMB_RS01840 - DNA methyltransferase, at 396,192 to 397,745 _RS01840 AMB_RS01845: AMB_RS01845 - DNA methylase, at 397,748 to 399,019 _RS01845 AMB_RS01850: AMB_RS01850 - hypothetical protein, at 399,006 to 399,221 _RS01850 AMB_RS01855: AMB_RS01855 - hypothetical protein, at 399,480 to 399,689 _RS01855 AMB_RS01860: AMB_RS01860 - HU family DNA-binding protein, at 399,780 to 400,034 _RS01860 Position (kb) 397 398 399 400Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 396.759 kb on + strand, within AMB_RS01840at 396.759 kb on + strand, within AMB_RS01840at 396.835 kb on + strand, within AMB_RS01840at 396.911 kb on + strand, within AMB_RS01840at 396.911 kb on + strand, within AMB_RS01840at 396.911 kb on + strand, within AMB_RS01840at 396.912 kb on - strand, within AMB_RS01840at 397.326 kb on + strand, within AMB_RS01840at 397.326 kb on + strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.419 kb on + strand, within AMB_RS01840at 397.419 kb on + strand, within AMB_RS01840at 397.419 kb on + strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.611 kb on + strandat 397.611 kb on + strandat 397.612 kb on - strandat 397.612 kb on - strandat 397.669 kb on - strandat 397.669 kb on - strandat 397.806 kb on - strandat 397.964 kb on - strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.017 kb on + strand, within AMB_RS01845at 398.017 kb on + strand, within AMB_RS01845at 398.018 kb on - strand, within AMB_RS01845at 398.032 kb on + strand, within AMB_RS01845at 398.032 kb on + strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.375 kb on + strand, within AMB_RS01845at 398.375 kb on + strand, within AMB_RS01845at 398.376 kb on - strand, within AMB_RS01845at 398.376 kb on - strand, within AMB_RS01845at 398.495 kb on + strand, within AMB_RS01845at 398.495 kb on + strand, within AMB_RS01845at 398.496 kb on - strand, within AMB_RS01845at 398.496 kb on - strand, within AMB_RS01845at 398.496 kb on - strand, within AMB_RS01845at 398.615 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.643 kb on - strand, within AMB_RS01845at 398.903 kb on + strandat 398.904 kb on - strandat 398.904 kb on - strandat 399.040 kb on + strand, within AMB_RS01850at 399.053 kb on + strand, within AMB_RS01850at 399.054 kb on - strand, within AMB_RS01850at 399.127 kb on + strand, within AMB_RS01850at 399.128 kb on - strand, within AMB_RS01850at 399.145 kb on + strand, within AMB_RS01850at 399.426 kb on + strandat 399.427 kb on - strandat 399.469 kb on - strandat 399.537 kb on + strand, within AMB_RS01855at 399.568 kb on + strand, within AMB_RS01855at 399.568 kb on + strand, within AMB_RS01855at 399.654 kb on + strand, within AMB_RS01855at 399.654 kb on + strand, within AMB_RS01855at 399.655 kb on - strand, within AMB_RS01855at 399.655 kb on - strand, within AMB_RS01855at 399.685 kb on + strandat 399.685 kb on + strandat 399.685 kb on + strandat 399.686 kb on - strandat 399.686 kb on - strandat 399.696 kb on + strandat 399.729 kb on + strandat 399.729 kb on + strandat 399.729 kb on + strandat 399.770 kb on + strandat 399.770 kb on + strandat 399.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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396,759 + AMB_RS01840 0.36 -1.3
396,759 + AMB_RS01840 0.36 -0.8
396,835 + AMB_RS01840 0.41 -1.8
396,911 + AMB_RS01840 0.46 -1.7
396,911 + AMB_RS01840 0.46 -1.3
396,911 + AMB_RS01840 0.46 +0.1
396,912 - AMB_RS01840 0.46 -0.4
397,326 + AMB_RS01840 0.73 +0.2
397,326 + AMB_RS01840 0.73 -4.5
397,327 - AMB_RS01840 0.73 +2.2
397,327 - AMB_RS01840 0.73 +0.2
397,327 - AMB_RS01840 0.73 -1.4
397,327 - AMB_RS01840 0.73 +0.1
397,419 + AMB_RS01840 0.79 -0.3
397,419 + AMB_RS01840 0.79 +0.2
397,419 + AMB_RS01840 0.79 -1.8
397,420 - AMB_RS01840 0.79 -0.4
397,420 - AMB_RS01840 0.79 -0.2
397,420 - AMB_RS01840 0.79 -3.5
397,420 - AMB_RS01840 0.79 -3.8
397,611 + +0.6
397,611 + +0.6
397,612 - -0.3
397,612 - +0.7
397,669 - -0.3
397,669 - +0.9
397,806 - -1.8
397,964 - AMB_RS01845 0.17 -0.6
398,015 + AMB_RS01845 0.21 -3.6
398,015 + AMB_RS01845 0.21 -1.7
398,015 + AMB_RS01845 0.21 -3.4
398,015 + AMB_RS01845 0.21 +0.2
398,017 + AMB_RS01845 0.21 +0.2
398,017 + AMB_RS01845 0.21 +0.2
398,018 - AMB_RS01845 0.21 -0.4
398,032 + AMB_RS01845 0.22 -2.0
398,032 + AMB_RS01845 0.22 -0.8
398,033 - AMB_RS01845 0.22 -0.6
398,033 - AMB_RS01845 0.22 -2.1
398,033 - AMB_RS01845 0.22 -1.3
398,033 - AMB_RS01845 0.22 -0.6
398,033 - AMB_RS01845 0.22 -1.8
398,033 - AMB_RS01845 0.22 +0.0
398,375 + AMB_RS01845 0.49 -0.7
398,375 + AMB_RS01845 0.49 -1.1
398,376 - AMB_RS01845 0.49 -0.3
398,376 - AMB_RS01845 0.49 -1.4
398,495 + AMB_RS01845 0.59 +0.3
398,495 + AMB_RS01845 0.59 -2.4
398,496 - AMB_RS01845 0.59 -0.7
398,496 - AMB_RS01845 0.59 -2.4
398,496 - AMB_RS01845 0.59 +0.2
398,615 + AMB_RS01845 0.68 -2.5
398,642 + AMB_RS01845 0.70 -1.5
398,642 + AMB_RS01845 0.70 -3.8
398,642 + AMB_RS01845 0.70 -0.3
398,642 + AMB_RS01845 0.70 -2.8
398,643 - AMB_RS01845 0.70 -2.2
398,903 + +0.2
398,904 - -1.6
398,904 - +1.3
399,040 + AMB_RS01850 0.16 +0.7
399,053 + AMB_RS01850 0.22 -1.4
399,054 - AMB_RS01850 0.22 +0.7
399,127 + AMB_RS01850 0.56 -4.3
399,128 - AMB_RS01850 0.56 +0.7
399,145 + AMB_RS01850 0.64 +2.0
399,426 + -0.9
399,427 - -0.6
399,469 - -0.3
399,537 + AMB_RS01855 0.27 -0.3
399,568 + AMB_RS01855 0.42 -0.3
399,568 + AMB_RS01855 0.42 -1.3
399,654 + AMB_RS01855 0.83 -0.4
399,654 + AMB_RS01855 0.83 -0.6
399,655 - AMB_RS01855 0.83 +0.2
399,655 - AMB_RS01855 0.83 +0.7
399,685 + -0.8
399,685 + +0.7
399,685 + -3.1
399,686 - -1.6
399,686 - +0.5
399,696 + +4.8
399,729 + -0.6
399,729 + -0.8
399,729 + +0.7
399,770 + +0.7
399,770 + -1.7
399,771 - -0.1

Or see this region's nucleotide sequence