Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01545 and AMB_RS01550 are separated by 74 nucleotides AMB_RS01550 and AMB_RS01555 are separated by 104 nucleotides AMB_RS01555 and AMB_RS01560 are separated by 207 nucleotides
AMB_RS01545: AMB_RS01545 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 342,815 to 344,377
_RS01545
AMB_RS01550: AMB_RS01550 - hypothetical protein, at 344,452 to 345,450
_RS01550
AMB_RS01555: AMB_RS01555 - hypothetical protein, at 345,555 to 346,148
_RS01555
AMB_RS01560: AMB_RS01560 - acyl-CoA dehydrogenase, at 346,356 to 348,017
_RS01560
Position (kb) 344
345
346 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 344.425 kb on - strand at 344.453 kb on + strand at 344.453 kb on + strand at 344.453 kb on + strand at 344.454 kb on - strand at 344.624 kb on + strand, within AMB_RS01550 at 344.624 kb on + strand, within AMB_RS01550 at 344.625 kb on - strand, within AMB_RS01550 at 344.633 kb on + strand, within AMB_RS01550 at 344.633 kb on + strand, within AMB_RS01550 at 344.633 kb on + strand, within AMB_RS01550 at 344.633 kb on + strand, within AMB_RS01550 at 344.633 kb on + strand, within AMB_RS01550 at 344.633 kb on + strand, within AMB_RS01550 at 344.634 kb on - strand, within AMB_RS01550 at 344.634 kb on - strand, within AMB_RS01550 at 344.634 kb on - strand, within AMB_RS01550 at 344.634 kb on - strand, within AMB_RS01550 at 344.699 kb on + strand, within AMB_RS01550 at 344.699 kb on + strand, within AMB_RS01550 at 344.699 kb on + strand, within AMB_RS01550 at 344.699 kb on + strand, within AMB_RS01550 at 344.699 kb on + strand, within AMB_RS01550 at 344.699 kb on + strand, within AMB_RS01550 at 344.700 kb on - strand, within AMB_RS01550 at 344.700 kb on - strand, within AMB_RS01550 at 344.700 kb on - strand, within AMB_RS01550 at 344.909 kb on + strand, within AMB_RS01550 at 345.086 kb on - strand, within AMB_RS01550 at 345.178 kb on - strand, within AMB_RS01550 at 345.182 kb on + strand, within AMB_RS01550 at 345.182 kb on + strand, within AMB_RS01550 at 345.183 kb on - strand, within AMB_RS01550 at 345.183 kb on - strand, within AMB_RS01550 at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.447 kb on - strand at 345.447 kb on - strand at 345.447 kb on - strand at 345.447 kb on - strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.782 kb on - strand, within AMB_RS01555 at 345.782 kb on - strand, within AMB_RS01555 at 346.164 kb on + strand at 346.164 kb on + strand at 346.165 kb on - strand at 346.238 kb on + strand at 346.238 kb on + strand at 346.238 kb on + strand at 346.239 kb on - strand at 346.308 kb on - strand at 346.354 kb on + strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.357 kb on + strand at 346.357 kb on + strand at 346.358 kb on - strand at 346.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 344,425 - +2.0 344,453 + -4.1 344,453 + +1.8 344,453 + +0.2 344,454 - -0.4 344,624 + AMB_RS01550 0.17 -1.4 344,624 + AMB_RS01550 0.17 -1.7 344,625 - AMB_RS01550 0.17 -2.6 344,633 + AMB_RS01550 0.18 -1.0 344,633 + AMB_RS01550 0.18 -1.0 344,633 + AMB_RS01550 0.18 -0.1 344,633 + AMB_RS01550 0.18 +0.2 344,633 + AMB_RS01550 0.18 +1.2 344,633 + AMB_RS01550 0.18 +0.1 344,634 - AMB_RS01550 0.18 -3.3 344,634 - AMB_RS01550 0.18 -3.1 344,634 - AMB_RS01550 0.18 +0.6 344,634 - AMB_RS01550 0.18 +2.2 344,699 + AMB_RS01550 0.25 +1.1 344,699 + AMB_RS01550 0.25 +0.1 344,699 + AMB_RS01550 0.25 -0.8 344,699 + AMB_RS01550 0.25 -1.0 344,699 + AMB_RS01550 0.25 +0.2 344,699 + AMB_RS01550 0.25 -2.1 344,700 - AMB_RS01550 0.25 -1.7 344,700 - AMB_RS01550 0.25 -4.2 344,700 - AMB_RS01550 0.25 -0.2 344,909 + AMB_RS01550 0.46 +1.1 345,086 - AMB_RS01550 0.63 -1.2 345,178 - AMB_RS01550 0.73 -2.2 345,182 + AMB_RS01550 0.73 -0.6 345,182 + AMB_RS01550 0.73 +1.3 345,183 - AMB_RS01550 0.73 +1.8 345,183 - AMB_RS01550 0.73 +0.2 345,446 + -1.2 345,446 + -0.7 345,446 + -1.7 345,446 + -0.2 345,446 + -0.2 345,446 + +0.8 345,447 - +1.0 345,447 - +0.0 345,447 - -1.8 345,447 - +0.2 345,481 + +0.5 345,481 + -0.8 345,481 + +0.8 345,481 + -1.6 345,481 + -2.6 345,481 + -0.6 345,482 - +1.2 345,482 - +0.8 345,482 - -3.1 345,482 - -0.2 345,482 - -0.2 345,556 + -1.0 345,556 + -1.5 345,556 + -1.7 345,556 + -2.1 345,556 + +0.1 345,782 - AMB_RS01555 0.38 +0.2 345,782 - AMB_RS01555 0.38 -1.7 346,164 + +0.3 346,164 + -0.1 346,165 - -1.6 346,238 + -0.6 346,238 + -0.2 346,238 + -0.2 346,239 - -0.0 346,308 - -1.6 346,354 + -5.9 346,355 - -1.0 346,355 - -1.9 346,355 - -0.7 346,355 - -2.2 346,355 - +2.2 346,355 - +0.9 346,355 - -0.2 346,357 + +0.8 346,357 + -0.2 346,358 - -4.1 346,358 - -0.1
Or see this region's nucleotide sequence