Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01445 and AMB_RS01450 overlap by 4 nucleotides AMB_RS01450 and AMB_RS01455 overlap by 4 nucleotides
AMB_RS01445: AMB_RS01445 - hypothetical protein, at 314,840 to 318,310
_RS01445
AMB_RS01450: AMB_RS01450 - hypothetical protein, at 318,307 to 319,227
_RS01450
AMB_RS01455: AMB_RS01455 - DNA mismatch repair protein MutS, at 319,224 to 321,830
_RS01455
Position (kb) 318
319
320 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 318.542 kb on + strand, within AMB_RS01450 at 318.542 kb on + strand, within AMB_RS01450 at 318.543 kb on - strand, within AMB_RS01450 at 318.543 kb on - strand, within AMB_RS01450 at 318.543 kb on - strand, within AMB_RS01450 at 318.810 kb on - strand, within AMB_RS01450 at 319.246 kb on + strand at 319.246 kb on + strand at 319.246 kb on + strand at 319.246 kb on + strand at 319.247 kb on - strand at 319.247 kb on - strand at 319.247 kb on - strand at 319.501 kb on + strand, within AMB_RS01455 at 319.501 kb on + strand, within AMB_RS01455 at 319.502 kb on - strand, within AMB_RS01455 at 319.627 kb on + strand, within AMB_RS01455 at 319.627 kb on + strand, within AMB_RS01455 at 319.627 kb on + strand, within AMB_RS01455 at 319.627 kb on + strand, within AMB_RS01455 at 319.628 kb on - strand, within AMB_RS01455 at 319.628 kb on - strand, within AMB_RS01455 at 319.875 kb on - strand, within AMB_RS01455 at 319.955 kb on + strand, within AMB_RS01455 at 319.956 kb on - strand, within AMB_RS01455 at 319.956 kb on - strand, within AMB_RS01455 at 319.956 kb on - strand, within AMB_RS01455
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 318,542 + AMB_RS01450 0.26 -0.4 318,542 + AMB_RS01450 0.26 +0.8 318,543 - AMB_RS01450 0.26 +0.0 318,543 - AMB_RS01450 0.26 -4.0 318,543 - AMB_RS01450 0.26 -2.0 318,810 - AMB_RS01450 0.55 -1.4 319,246 + +0.7 319,246 + -0.2 319,246 + -1.2 319,246 + -1.8 319,247 - -0.2 319,247 - -0.5 319,247 - -0.2 319,501 + AMB_RS01455 0.11 -1.2 319,501 + AMB_RS01455 0.11 -0.5 319,502 - AMB_RS01455 0.11 -1.8 319,627 + AMB_RS01455 0.15 +0.8 319,627 + AMB_RS01455 0.15 -0.2 319,627 + AMB_RS01455 0.15 -0.2 319,627 + AMB_RS01455 0.15 -0.2 319,628 - AMB_RS01455 0.15 +0.3 319,628 - AMB_RS01455 0.15 -0.2 319,875 - AMB_RS01455 0.25 -0.6 319,955 + AMB_RS01455 0.28 -3.3 319,956 - AMB_RS01455 0.28 -4.9 319,956 - AMB_RS01455 0.28 -0.8 319,956 - AMB_RS01455 0.28 +0.8
Or see this region's nucleotide sequence