Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01100 and AMB_RS01105 overlap by 4 nucleotides AMB_RS01105 and AMB_RS01110 are separated by 0 nucleotides AMB_RS01110 and AMB_RS23825 are separated by 127 nucleotides AMB_RS23825 and AMB_RS01115 are separated by 44 nucleotides
AMB_RS01100: AMB_RS01100 - potassium/proton antiporter, at 244,849 to 246,642
_RS01100
AMB_RS01105: AMB_RS01105 - rhodanese-like domain-containing protein, at 246,639 to 247,049
_RS01105
AMB_RS01110: AMB_RS01110 - hypothetical protein, at 247,050 to 247,445
_RS01110
AMB_RS23825: AMB_RS23825 - acylphosphatase, at 247,573 to 247,856
_RS23825
AMB_RS01115: AMB_RS01115 - beta-glucosidase, at 247,901 to 249,262
_RS01115
Position (kb) 247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 246.101 kb on - strand, within AMB_RS01100 at 246.191 kb on - strand, within AMB_RS01100 at 246.354 kb on + strand, within AMB_RS01100 at 246.354 kb on + strand, within AMB_RS01100 at 246.354 kb on + strand, within AMB_RS01100 at 246.355 kb on - strand, within AMB_RS01100 at 246.377 kb on - strand, within AMB_RS01100 at 246.855 kb on + strand, within AMB_RS01105 at 246.856 kb on - strand, within AMB_RS01105 at 246.856 kb on - strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.892 kb on + strand, within AMB_RS01105 at 246.893 kb on - strand, within AMB_RS01105 at 246.893 kb on - strand, within AMB_RS01105 at 246.893 kb on - strand, within AMB_RS01105 at 246.897 kb on + strand, within AMB_RS01105 at 246.897 kb on + strand, within AMB_RS01105 at 246.897 kb on + strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 247.087 kb on + strand at 247.087 kb on + strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.213 kb on + strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.216 kb on - strand, within AMB_RS01110 at 247.219 kb on + strand, within AMB_RS01110 at 247.548 kb on + strand at 247.548 kb on + strand at 247.548 kb on + strand at 247.548 kb on + strand at 247.548 kb on + strand at 247.549 kb on - strand at 247.549 kb on - strand at 247.549 kb on - strand at 247.549 kb on - strand at 247.550 kb on + strand at 247.550 kb on + strand at 247.551 kb on - strand at 247.551 kb on - strand at 247.552 kb on + strand at 247.552 kb on + strand at 247.553 kb on - strand at 248.006 kb on + strand at 248.007 kb on - strand at 248.007 kb on - strand at 248.103 kb on - strand, within AMB_RS01115 at 248.103 kb on - strand, within AMB_RS01115 at 248.231 kb on + strand, within AMB_RS01115 at 248.231 kb on + strand, within AMB_RS01115 at 248.232 kb on - strand, within AMB_RS01115 at 248.288 kb on + strand, within AMB_RS01115 at 248.288 kb on + strand, within AMB_RS01115 at 248.414 kb on + strand, within AMB_RS01115 at 248.414 kb on + strand, within AMB_RS01115 at 248.415 kb on - strand, within AMB_RS01115 at 248.415 kb on - strand, within AMB_RS01115 at 248.415 kb on - strand, within AMB_RS01115 at 248.415 kb on - strand, within AMB_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 246,101 - AMB_RS01100 0.70 +0.3 246,191 - AMB_RS01100 0.75 -2.0 246,354 + AMB_RS01100 0.84 -3.1 246,354 + AMB_RS01100 0.84 -0.8 246,354 + AMB_RS01100 0.84 -1.3 246,355 - AMB_RS01100 0.84 -0.1 246,377 - AMB_RS01100 0.85 +1.2 246,855 + AMB_RS01105 0.53 -1.0 246,856 - AMB_RS01105 0.53 -0.5 246,856 - AMB_RS01105 0.53 -1.1 246,858 + AMB_RS01105 0.53 +0.3 246,858 + AMB_RS01105 0.53 -1.2 246,858 + AMB_RS01105 0.53 -0.7 246,858 + AMB_RS01105 0.53 -0.7 246,859 - AMB_RS01105 0.54 -0.5 246,859 - AMB_RS01105 0.54 -1.7 246,859 - AMB_RS01105 0.54 -1.0 246,859 - AMB_RS01105 0.54 -0.3 246,859 - AMB_RS01105 0.54 -0.5 246,859 - AMB_RS01105 0.54 +0.5 246,859 - AMB_RS01105 0.54 -0.5 246,892 + AMB_RS01105 0.62 -0.8 246,893 - AMB_RS01105 0.62 +1.2 246,893 - AMB_RS01105 0.62 +0.9 246,893 - AMB_RS01105 0.62 -1.0 246,897 + AMB_RS01105 0.63 -0.1 246,897 + AMB_RS01105 0.63 -1.5 246,897 + AMB_RS01105 0.63 +1.9 246,898 - AMB_RS01105 0.63 +1.0 246,898 - AMB_RS01105 0.63 -0.3 246,898 - AMB_RS01105 0.63 -0.2 246,898 - AMB_RS01105 0.63 -0.7 246,898 - AMB_RS01105 0.63 +1.3 247,087 + +0.3 247,087 + -2.2 247,088 - +0.5 247,088 - -1.5 247,088 - +0.3 247,088 - +0.9 247,213 + AMB_RS01110 0.41 +0.6 247,214 - AMB_RS01110 0.41 -0.6 247,214 - AMB_RS01110 0.41 -2.1 247,214 - AMB_RS01110 0.41 -0.1 247,214 - AMB_RS01110 0.41 -0.4 247,216 - AMB_RS01110 0.42 +0.3 247,219 + AMB_RS01110 0.43 -0.5 247,548 + -0.7 247,548 + +0.4 247,548 + -1.1 247,548 + -1.5 247,548 + -3.7 247,549 - -0.7 247,549 - -2.3 247,549 - -2.1 247,549 - +0.4 247,550 + -0.1 247,550 + -2.8 247,551 - -2.3 247,551 - +0.9 247,552 + -0.3 247,552 + -0.3 247,553 - -0.4 248,006 + +0.6 248,007 - +1.9 248,007 - -1.8 248,103 - AMB_RS01115 0.15 -0.5 248,103 - AMB_RS01115 0.15 +0.8 248,231 + AMB_RS01115 0.24 +0.7 248,231 + AMB_RS01115 0.24 -0.0 248,232 - AMB_RS01115 0.24 -0.7 248,288 + AMB_RS01115 0.28 -3.1 248,288 + AMB_RS01115 0.28 -1.1 248,414 + AMB_RS01115 0.38 +1.9 248,414 + AMB_RS01115 0.38 +1.2 248,415 - AMB_RS01115 0.38 +0.9 248,415 - AMB_RS01115 0.38 -1.0 248,415 - AMB_RS01115 0.38 +0.3 248,415 - AMB_RS01115 0.38 +0.3
Or see this region's nucleotide sequence