Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00955 and AMB_RS00960 overlap by 14 nucleotides AMB_RS00960 and AMB_RS00965 overlap by 4 nucleotides AMB_RS00965 and AMB_RS00970 are separated by 235 nucleotides
AMB_RS00955: AMB_RS00955 - ATP-binding protein, at 216,700 to 218,016
_RS00955
AMB_RS00960: AMB_RS00960 - DNA-binding response regulator, at 218,003 to 218,674
_RS00960
AMB_RS00965: AMB_RS00965 - membrane protein, at 218,671 to 218,961
_RS00965
AMB_RS00970: AMB_RS00970 - DUF1924 domain-containing protein, at 219,197 to 220,033
_RS00970
Position (kb) 218
219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 218.139 kb on + strand, within AMB_RS00960 at 218.139 kb on + strand, within AMB_RS00960 at 218.139 kb on + strand, within AMB_RS00960 at 218.139 kb on + strand, within AMB_RS00960 at 218.140 kb on - strand, within AMB_RS00960 at 218.140 kb on - strand, within AMB_RS00960 at 218.140 kb on - strand, within AMB_RS00960 at 218.382 kb on + strand, within AMB_RS00960 at 218.382 kb on + strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.541 kb on + strand, within AMB_RS00960 at 218.541 kb on + strand, within AMB_RS00960 at 218.542 kb on - strand, within AMB_RS00960 at 218.717 kb on + strand, within AMB_RS00965 at 218.717 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 219.089 kb on + strand at 219.089 kb on + strand at 219.090 kb on - strand at 219.090 kb on - strand at 219.095 kb on + strand at 219.095 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.270 kb on - strand at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.317 kb on + strand, within AMB_RS00970 at 219.318 kb on - strand, within AMB_RS00970
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 218,139 + AMB_RS00960 0.20 +1.7 218,139 + AMB_RS00960 0.20 -1.3 218,139 + AMB_RS00960 0.20 -0.1 218,139 + AMB_RS00960 0.20 +1.6 218,140 - AMB_RS00960 0.20 +0.3 218,140 - AMB_RS00960 0.20 +0.3 218,140 - AMB_RS00960 0.20 +0.6 218,382 + AMB_RS00960 0.56 +0.2 218,382 + AMB_RS00960 0.56 -0.5 218,383 - AMB_RS00960 0.57 +0.9 218,383 - AMB_RS00960 0.57 +2.2 218,383 - AMB_RS00960 0.57 +2.3 218,541 + AMB_RS00960 0.80 -2.1 218,541 + AMB_RS00960 0.80 +1.3 218,542 - AMB_RS00960 0.80 -1.0 218,717 + AMB_RS00965 0.16 -1.1 218,717 + AMB_RS00965 0.16 -0.5 218,720 + AMB_RS00965 0.17 -3.6 218,720 + AMB_RS00965 0.17 -0.7 218,720 + AMB_RS00965 0.17 -2.5 218,720 + AMB_RS00965 0.17 -3.1 219,089 + -0.1 219,089 + -4.3 219,090 - -4.6 219,090 - +0.1 219,095 + -1.5 219,095 + -4.1 219,138 + -0.5 219,138 + -0.6 219,138 + -0.7 219,138 + -4.3 219,138 + +0.3 219,138 + -0.1 219,139 - -1.8 219,139 - -1.1 219,139 - -1.7 219,139 - +0.3 219,139 - +1.9 219,139 - +0.2 219,144 + -2.2 219,144 + +0.7 219,144 + -3.3 219,269 + -0.1 219,269 + +0.3 219,269 + -0.1 219,269 + -0.7 219,269 + +1.9 219,269 + -1.7 219,269 + -1.3 219,269 + +0.0 219,270 - -0.7 219,293 + AMB_RS00970 0.11 +0.3 219,293 + AMB_RS00970 0.11 -0.7 219,293 + AMB_RS00970 0.11 +1.9 219,293 + AMB_RS00970 0.11 -4.3 219,293 + AMB_RS00970 0.11 -1.1 219,293 + AMB_RS00970 0.11 -0.4 219,293 + AMB_RS00970 0.11 +0.9 219,293 + AMB_RS00970 0.11 -0.7 219,293 + AMB_RS00970 0.11 +2.1 219,293 + AMB_RS00970 0.11 -0.1 219,293 + AMB_RS00970 0.11 -0.7 219,294 - AMB_RS00970 0.12 -0.5 219,294 - AMB_RS00970 0.12 +0.3 219,294 - AMB_RS00970 0.12 -3.7 219,294 - AMB_RS00970 0.12 +0.3 219,294 - AMB_RS00970 0.12 -0.1 219,294 - AMB_RS00970 0.12 -3.7 219,317 + AMB_RS00970 0.14 -0.7 219,318 - AMB_RS00970 0.14 -1.7
Or see this region's nucleotide sequence