Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00895 and AMB_RS00900 overlap by 17 nucleotides AMB_RS00900 and AMB_RS00905 overlap by 4 nucleotides AMB_RS00905 and AMB_RS00910 are separated by 52 nucleotides
AMB_RS00895: AMB_RS00895 - benzoyl-CoA 2,3-epoxidase subunit BoxA, at 202,766 to 203,947
_RS00895
AMB_RS00900: AMB_RS00900 - acyl-CoA thioesterase, at 203,931 to 204,407
_RS00900
AMB_RS00905: AMB_RS00905 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 204,404 to 205,189
_RS00905
AMB_RS00910: AMB_RS00910 - indolepyruvate ferredoxin subunit alpha, at 205,242 to 207,341
_RS00910
Position (kb) 203
204
205 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 203.135 kb on + strand, within AMB_RS00895 at 203.136 kb on - strand, within AMB_RS00895 at 203.147 kb on + strand, within AMB_RS00895 at 203.147 kb on + strand, within AMB_RS00895 at 203.189 kb on - strand, within AMB_RS00895 at 203.189 kb on - strand, within AMB_RS00895 at 203.189 kb on - strand, within AMB_RS00895 at 203.339 kb on + strand, within AMB_RS00895 at 203.340 kb on - strand, within AMB_RS00895 at 203.340 kb on - strand, within AMB_RS00895 at 203.340 kb on - strand, within AMB_RS00895 at 203.432 kb on + strand, within AMB_RS00895 at 203.432 kb on + strand, within AMB_RS00895 at 203.433 kb on - strand, within AMB_RS00895 at 203.433 kb on - strand, within AMB_RS00895 at 203.433 kb on - strand, within AMB_RS00895 at 203.654 kb on + strand, within AMB_RS00895 at 203.738 kb on + strand, within AMB_RS00895 at 203.738 kb on + strand, within AMB_RS00895 at 203.738 kb on + strand, within AMB_RS00895 at 203.738 kb on + strand, within AMB_RS00895 at 203.738 kb on + strand, within AMB_RS00895 at 203.739 kb on - strand, within AMB_RS00895 at 203.739 kb on - strand, within AMB_RS00895 at 203.739 kb on - strand, within AMB_RS00895 at 203.739 kb on - strand, within AMB_RS00895 at 203.927 kb on + strand at 203.928 kb on - strand at 203.928 kb on - strand at 203.928 kb on - strand at 203.942 kb on + strand at 203.943 kb on - strand at 203.943 kb on - strand at 204.036 kb on + strand, within AMB_RS00900 at 204.037 kb on - strand, within AMB_RS00900 at 204.057 kb on + strand, within AMB_RS00900 at 204.057 kb on + strand, within AMB_RS00900 at 204.058 kb on - strand, within AMB_RS00900 at 204.111 kb on + strand, within AMB_RS00900 at 204.112 kb on - strand, within AMB_RS00900 at 204.123 kb on - strand, within AMB_RS00900 at 204.166 kb on - strand, within AMB_RS00900 at 204.375 kb on + strand at 204.375 kb on + strand at 204.375 kb on + strand at 204.376 kb on - strand at 204.376 kb on - strand at 204.662 kb on + strand, within AMB_RS00905 at 204.662 kb on + strand, within AMB_RS00905 at 204.663 kb on - strand, within AMB_RS00905 at 204.663 kb on - strand, within AMB_RS00905 at 204.664 kb on + strand, within AMB_RS00905 at 205.066 kb on + strand, within AMB_RS00905 at 205.131 kb on - strand at 205.211 kb on + strand at 205.212 kb on - strand at 205.212 kb on - strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.359 kb on + strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.360 kb on - strand at 205.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 203,135 + AMB_RS00895 0.31 +0.7 203,136 - AMB_RS00895 0.31 -0.4 203,147 + AMB_RS00895 0.32 -1.3 203,147 + AMB_RS00895 0.32 -1.0 203,189 - AMB_RS00895 0.36 -1.3 203,189 - AMB_RS00895 0.36 -1.1 203,189 - AMB_RS00895 0.36 -1.0 203,339 + AMB_RS00895 0.48 -1.0 203,340 - AMB_RS00895 0.49 -0.7 203,340 - AMB_RS00895 0.49 -1.0 203,340 - AMB_RS00895 0.49 -1.7 203,432 + AMB_RS00895 0.56 -4.0 203,432 + AMB_RS00895 0.56 +0.9 203,433 - AMB_RS00895 0.56 +2.4 203,433 - AMB_RS00895 0.56 -0.2 203,433 - AMB_RS00895 0.56 -3.8 203,654 + AMB_RS00895 0.75 -0.1 203,738 + AMB_RS00895 0.82 -2.5 203,738 + AMB_RS00895 0.82 +1.9 203,738 + AMB_RS00895 0.82 +2.1 203,738 + AMB_RS00895 0.82 -0.7 203,738 + AMB_RS00895 0.82 +2.4 203,739 - AMB_RS00895 0.82 -2.3 203,739 - AMB_RS00895 0.82 -1.6 203,739 - AMB_RS00895 0.82 +0.3 203,739 - AMB_RS00895 0.82 +0.1 203,927 + -0.1 203,928 - +0.8 203,928 - -0.1 203,928 - -1.7 203,942 + +0.9 203,943 - -0.3 203,943 - -1.3 204,036 + AMB_RS00900 0.22 -1.1 204,037 - AMB_RS00900 0.22 -0.9 204,057 + AMB_RS00900 0.26 -1.6 204,057 + AMB_RS00900 0.26 +1.9 204,058 - AMB_RS00900 0.27 -0.4 204,111 + AMB_RS00900 0.38 -3.0 204,112 - AMB_RS00900 0.38 -5.0 204,123 - AMB_RS00900 0.40 -3.6 204,166 - AMB_RS00900 0.49 +0.9 204,375 + +0.6 204,375 + +0.9 204,375 + -4.5 204,376 - -0.1 204,376 - +0.3 204,662 + AMB_RS00905 0.33 -1.3 204,662 + AMB_RS00905 0.33 -1.0 204,663 - AMB_RS00905 0.33 +2.0 204,663 - AMB_RS00905 0.33 -1.4 204,664 + AMB_RS00905 0.33 -1.0 205,066 + AMB_RS00905 0.84 +0.4 205,131 - +0.0 205,211 + -2.2 205,212 - -0.3 205,212 - -0.1 205,359 + -3.2 205,359 + -1.1 205,359 + -2.4 205,359 + -2.0 205,359 + +0.3 205,359 + +0.3 205,359 + +0.2 205,359 + +0.3 205,359 + +0.6 205,359 + +0.9 205,360 - -0.2 205,360 - +1.7 205,360 - +0.9 205,360 - -0.9 205,360 - -0.1 205,360 - -3.6 205,360 - +0.3 205,360 - -0.5 205,360 - -0.5 205,372 - +2.0
Or see this region's nucleotide sequence