Strain Fitness in Escherichia coli BW25113 around b2064
Experiment: Fusidic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,136,836 | + | yegH | b2063 | 0.57 | +1.5 |
2,136,865 | - | yegH | b2063 | 0.59 | -1.1 |
2,136,940 | + | yegH | b2063 | 0.64 | -1.9 |
2,137,000 | - | yegH | b2063 | 0.68 | -0.7 |
2,137,000 | - | yegH | b2063 | 0.68 | +0.8 |
2,137,023 | - | yegH | b2063 | 0.69 | -0.2 |
2,137,147 | + | yegH | b2063 | 0.77 | +0.6 |
2,137,264 | - | yegH | b2063 | 0.84 | -0.2 |
2,137,290 | - | yegH | b2063 | 0.86 | +0.8 |
2,137,305 | - | yegH | b2063 | 0.87 | +1.3 |
2,137,305 | - | yegH | b2063 | 0.87 | +0.6 |
2,137,355 | + | -0.6 | |||
2,137,368 | + | -0.1 | |||
2,137,451 | - | -0.2 | |||
2,137,471 | - | -0.8 | |||
2,137,617 | - | +1.1 | |||
2,137,618 | + | +0.9 | |||
2,137,618 | + | +1.2 | |||
2,137,653 | - | -1.5 | |||
2,137,688 | + | +1.2 | |||
2,137,764 | + | +0.1 | |||
2,137,767 | - | +1.5 | |||
2,137,789 | - | +0.3 | |||
2,137,844 | + | +0.4 | |||
2,137,881 | - | +2.3 | |||
2,137,881 | - | +1.3 | |||
2,137,934 | - | +2.0 | |||
2,137,934 | - | +1.6 | |||
2,137,937 | + | +2.1 | |||
2,137,944 | - | +3.0 | |||
2,137,953 | + | +2.2 | |||
2,137,953 | + | +0.3 | |||
2,138,077 | - | asmA | b2064 | 0.16 | +2.1 |
2,138,115 | - | asmA | b2064 | 0.18 | +2.6 |
2,138,212 | + | asmA | b2064 | 0.23 | -1.8 |
2,138,230 | - | asmA | b2064 | 0.24 | +0.5 |
2,138,243 | - | asmA | b2064 | 0.25 | -2.2 |
2,138,328 | - | asmA | b2064 | 0.29 | -1.6 |
2,138,328 | - | asmA | b2064 | 0.29 | -1.6 |
2,138,347 | - | asmA | b2064 | 0.30 | +1.0 |
2,138,402 | - | asmA | b2064 | 0.33 | -2.1 |
2,138,402 | - | asmA | b2064 | 0.33 | +0.8 |
2,138,511 | - | asmA | b2064 | 0.39 | -0.8 |
2,138,594 | - | asmA | b2064 | 0.44 | -1.6 |
2,138,599 | - | asmA | b2064 | 0.44 | -0.2 |
2,138,599 | - | asmA | b2064 | 0.44 | -0.2 |
2,138,758 | - | asmA | b2064 | 0.53 | -1.6 |
2,138,820 | + | asmA | b2064 | 0.56 | -2.1 |
2,138,829 | + | asmA | b2064 | 0.56 | -3.2 |
2,138,849 | - | asmA | b2064 | 0.57 | -1.6 |
2,138,959 | - | asmA | b2064 | 0.63 | -0.2 |
2,139,025 | + | asmA | b2064 | 0.67 | -2.4 |
2,139,052 | + | asmA | b2064 | 0.68 | -1.6 |
2,139,108 | - | asmA | b2064 | 0.71 | -1.8 |
2,139,191 | - | asmA | b2064 | 0.76 | -1.7 |
2,139,272 | - | asmA | b2064 | 0.80 | -3.1 |
2,139,299 | + | asmA | b2064 | 0.82 | -2.4 |
2,139,366 | - | asmA | b2064 | 0.85 | -4.3 |
2,139,390 | - | asmA | b2064 | 0.87 | -4.1 |
2,139,416 | - | asmA | b2064 | 0.88 | -1.2 |
2,139,457 | - | -0.8 | |||
2,139,457 | - | -3.1 | |||
2,139,516 | - | -0.2 | |||
2,139,521 | - | -0.8 | |||
2,139,521 | - | -3.1 | |||
2,139,530 | + | -0.8 | |||
2,139,574 | + | -1.6 | |||
2,139,574 | + | +0.0 | |||
2,139,640 | + | -0.2 | |||
2,140,303 | + | -0.2 | |||
2,140,303 | + | -0.1 | |||
2,140,303 | + | +1.9 | |||
2,140,311 | - | +0.8 | |||
2,140,363 | + | -0.7 | |||
2,140,494 | - | +0.8 | |||
2,140,494 | - | udk | b2066 | 0.25 | +0.2 |
2,140,505 | + | udk | b2066 | 0.27 | -0.6 |
Or see this region's nucleotide sequence