Strain Fitness in Escherichia coli BW25113 around b1630

Experiment: Fusidic 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxC and rsxD are separated by 0 nucleotidesrsxD and rsxG are separated by 3 nucleotidesrsxG and rsxE are separated by 3 nucleotides b1629: rsxC - electron transport complex protein RnfC (NCBI), at 1,704,943 to 1,707,165 rsxC b1630: rsxD - electron transport complex protein RnfD (NCBI), at 1,707,166 to 1,708,224 rsxD b1631: rsxG - electron transport complex protein RnfG (NCBI), at 1,708,228 to 1,708,848 rsxG b1632: rsxE - NADH-ubiquinone oxidoreductase (NCBI), at 1,708,852 to 1,709,547 rsxE Position (kb) 1707 1708 1709Strain fitness (log2 ratio) -1 0 1 2at 1706.363 kb on + strand, within rsxCat 1706.547 kb on - strand, within rsxCat 1706.829 kb on + strand, within rsxCat 1706.859 kb on + strand, within rsxCat 1706.859 kb on + strand, within rsxCat 1706.883 kb on - strand, within rsxCat 1706.883 kb on - strand, within rsxCat 1706.924 kb on + strand, within rsxCat 1707.252 kb on + strandat 1707.252 kb on + strandat 1707.328 kb on + strand, within rsxDat 1707.414 kb on + strand, within rsxDat 1707.414 kb on + strand, within rsxDat 1707.473 kb on - strand, within rsxDat 1707.579 kb on - strand, within rsxDat 1707.696 kb on - strand, within rsxDat 1707.716 kb on + strand, within rsxDat 1707.793 kb on + strand, within rsxDat 1707.803 kb on - strand, within rsxDat 1707.895 kb on + strand, within rsxDat 1707.914 kb on - strand, within rsxDat 1707.924 kb on + strand, within rsxDat 1708.021 kb on + strand, within rsxDat 1708.161 kb on + strandat 1708.161 kb on + strandat 1708.187 kb on - strandat 1708.227 kb on - strandat 1708.253 kb on + strandat 1708.253 kb on + strandat 1708.996 kb on - strand, within rsxEat 1709.004 kb on + strand, within rsxEat 1709.034 kb on - strand, within rsxEat 1709.096 kb on + strand, within rsxEat 1709.096 kb on + strand, within rsxEat 1709.106 kb on - strand, within rsxEat 1709.123 kb on + strand, within rsxEat 1709.128 kb on + strand, within rsxEat 1709.182 kb on + strand, within rsxE

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml
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1,706,363 + rsxC b1629 0.64 +2.2
1,706,547 - rsxC b1629 0.72 +1.3
1,706,829 + rsxC b1629 0.85 +1.5
1,706,859 + rsxC b1629 0.86 +1.2
1,706,859 + rsxC b1629 0.86 +0.6
1,706,883 - rsxC b1629 0.87 +0.8
1,706,883 - rsxC b1629 0.87 +2.0
1,706,924 + rsxC b1629 0.89 -0.2
1,707,252 + +1.6
1,707,252 + +1.2
1,707,328 + rsxD b1630 0.15 -0.1
1,707,414 + rsxD b1630 0.23 +1.6
1,707,414 + rsxD b1630 0.23 +0.6
1,707,473 - rsxD b1630 0.29 +0.2
1,707,579 - rsxD b1630 0.39 +0.1
1,707,696 - rsxD b1630 0.50 +2.0
1,707,716 + rsxD b1630 0.52 +0.4
1,707,793 + rsxD b1630 0.59 +1.6
1,707,803 - rsxD b1630 0.60 +1.2
1,707,895 + rsxD b1630 0.69 +0.2
1,707,914 - rsxD b1630 0.71 +1.4
1,707,924 + rsxD b1630 0.72 +0.0
1,708,021 + rsxD b1630 0.81 +0.2
1,708,161 + +0.5
1,708,161 + -0.4
1,708,187 - +0.9
1,708,227 - +1.1
1,708,253 + +1.8
1,708,253 + +2.1
1,708,996 - rsxE b1632 0.21 +0.5
1,709,004 + rsxE b1632 0.22 +0.1
1,709,034 - rsxE b1632 0.26 +0.5
1,709,096 + rsxE b1632 0.35 +2.2
1,709,096 + rsxE b1632 0.35 +0.5
1,709,106 - rsxE b1632 0.36 +0.7
1,709,123 + rsxE b1632 0.39 +0.5
1,709,128 + rsxE b1632 0.40 +0.9
1,709,182 + rsxE b1632 0.47 +1.1

Or see this region's nucleotide sequence