Strain Fitness in Escherichia coli BW25113 around b1480
Experiment: Fusidic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,553,155 | + | sfcA | b1479 | 0.68 | +0.7 |
1,553,284 | - | sfcA | b1479 | 0.76 | +1.0 |
1,553,427 | + | sfcA | b1479 | 0.84 | -0.7 |
1,553,435 | - | sfcA | b1479 | 0.85 | -0.3 |
1,553,588 | + | -0.6 | |||
1,553,636 | + | -0.3 | |||
1,553,636 | + | +0.8 | |||
1,553,638 | + | -0.6 | |||
1,553,647 | + | +0.6 | |||
1,553,700 | - | +0.7 | |||
1,553,833 | + | +0.4 | |||
1,553,833 | + | +1.0 | |||
1,553,951 | + | sra | b1480 | 0.73 | -0.3 |
1,553,951 | + | sra | b1480 | 0.73 | -0.4 |
1,553,951 | + | sra | b1480 | 0.73 | -1.0 |
1,554,079 | + | +0.8 | |||
1,554,082 | - | +0.4 | |||
1,554,097 | - | +0.3 | |||
1,554,101 | + | +0.3 | |||
1,554,111 | - | b1481 | b1481 | 0.10 | -0.4 |
1,554,111 | - | b1481 | b1481 | 0.10 | -0.2 |
1,554,123 | - | b1481 | b1481 | 0.16 | +0.6 |
1,554,132 | + | b1481 | b1481 | 0.20 | +0.3 |
1,554,144 | - | b1481 | b1481 | 0.25 | +1.2 |
1,554,218 | + | b1481 | b1481 | 0.60 | +0.8 |
1,554,224 | - | b1481 | b1481 | 0.62 | -0.6 |
1,554,224 | - | b1481 | b1481 | 0.62 | -0.2 |
1,554,244 | - | b1481 | b1481 | 0.72 | -0.6 |
1,554,249 | + | b1481 | b1481 | 0.74 | +1.6 |
1,554,257 | - | b1481 | b1481 | 0.78 | -0.6 |
1,554,273 | + | b1481 | b1481 | 0.85 | +0.3 |
1,554,365 | + | -1.2 | |||
1,554,407 | + | -0.8 | |||
1,554,599 | + | +0.6 | |||
1,554,599 | + | -1.4 | |||
1,554,601 | + | +0.6 | |||
1,554,639 | - | +1.4 | |||
1,554,678 | + | +0.4 | |||
1,554,678 | - | +0.0 | |||
1,554,684 | - | -0.4 | |||
1,554,697 | + | osmC | b1482 | 0.11 | +1.4 |
1,554,707 | + | osmC | b1482 | 0.13 | -1.0 |
1,554,718 | + | osmC | b1482 | 0.16 | -0.0 |
1,554,723 | - | osmC | b1482 | 0.17 | +0.0 |
Or see this region's nucleotide sequence