Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21945 and PS417_21950 overlap by 4 nucleotides PS417_21950 and PS417_21955 are separated by 34 nucleotides PS417_21955 and PS417_21960 are separated by 42 nucleotides PS417_21960 and PS417_21965 are separated by 146 nucleotides
PS417_21945: PS417_21945 - RNA polymerase subunit sigma-24, at 4,760,733 to 4,761,956
_21945
PS417_21950: PS417_21950 - polyketide cyclase, at 4,761,953 to 4,762,429
_21950
PS417_21955: PS417_21955 - dehydrogenase, at 4,762,464 to 4,762,808
_21955
PS417_21960: PS417_21960 - ketosteroid isomerase, at 4,762,851 to 4,763,270
_21960
PS417_21965: PS417_21965 - GNAT family acetyltransferase, at 4,763,417 to 4,763,935
_21965
Position (kb) 4762
4763 Strain fitness (log2 ratio) -2
-1
0
1 at 4761.588 kb on + strand, within PS417_21945 at 4761.589 kb on - strand, within PS417_21945 at 4761.589 kb on - strand, within PS417_21945 at 4762.080 kb on + strand, within PS417_21950 at 4762.424 kb on - strand at 4762.451 kb on - strand at 4762.451 kb on - strand at 4762.451 kb on - strand at 4762.573 kb on + strand, within PS417_21955 at 4762.573 kb on + strand, within PS417_21955 at 4762.723 kb on + strand, within PS417_21955 at 4762.801 kb on + strand at 4762.801 kb on + strand at 4762.838 kb on + strand at 4762.838 kb on + strand at 4762.839 kb on - strand at 4762.839 kb on - strand at 4763.395 kb on + strand at 4763.395 kb on + strand at 4763.396 kb on - strand at 4763.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 4,761,588 + PS417_21945 0.70 -0.7 4,761,589 - PS417_21945 0.70 +0.0 4,761,589 - PS417_21945 0.70 +0.1 4,762,080 + PS417_21950 0.27 -2.5 4,762,424 - +0.5 4,762,451 - -0.5 4,762,451 - -2.4 4,762,451 - -0.7 4,762,573 + PS417_21955 0.32 -0.6 4,762,573 + PS417_21955 0.32 -0.5 4,762,723 + PS417_21955 0.75 -0.8 4,762,801 + +1.1 4,762,801 + -0.2 4,762,838 + +0.7 4,762,838 + +0.6 4,762,839 - -0.0 4,762,839 - -0.5 4,763,395 + -0.4 4,763,395 + +0.8 4,763,396 - -0.2 4,763,396 - -0.7
Or see this region's nucleotide sequence