Experiment: 2-Keto-D-gluconic hemicalcium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3652 and Atu3653 are separated by 47 nucleotides Atu3653 and Atu3654 are separated by 553 nucleotides
Atu3652: Atu3652 - hypothetical protein, at 703,047 to 703,889
Atu3652
Atu3653: Atu3653 - hypothetical protein, at 703,937 to 704,173
Atu3653
Atu3654: Atu3654 - hypothetical protein, at 704,727 to 705,242
Atu3654
Position (kb) 703
704
705 Strain fitness (log2 ratio) -1
0
1
2
3 at 702.948 kb on + strand at 702.951 kb on - strand at 702.956 kb on - strand at 702.965 kb on - strand at 702.978 kb on + strand at 702.978 kb on + strand at 703.105 kb on - strand at 703.128 kb on - strand at 703.205 kb on - strand, within Atu3652 at 703.220 kb on + strand, within Atu3652 at 703.220 kb on - strand, within Atu3652 at 703.227 kb on - strand, within Atu3652 at 703.342 kb on + strand, within Atu3652 at 703.342 kb on - strand, within Atu3652 at 703.419 kb on + strand, within Atu3652 at 703.437 kb on - strand, within Atu3652 at 703.438 kb on - strand, within Atu3652 at 703.462 kb on - strand, within Atu3652 at 703.462 kb on - strand, within Atu3652 at 703.502 kb on - strand, within Atu3652 at 703.546 kb on + strand, within Atu3652 at 703.641 kb on + strand, within Atu3652 at 703.659 kb on + strand, within Atu3652 at 703.771 kb on + strand, within Atu3652 at 703.776 kb on + strand, within Atu3652 at 703.776 kb on + strand, within Atu3652 at 703.818 kb on - strand at 703.932 kb on - strand at 703.962 kb on - strand, within Atu3653 at 703.998 kb on + strand, within Atu3653 at 704.016 kb on - strand, within Atu3653 at 704.034 kb on + strand, within Atu3653 at 704.115 kb on - strand, within Atu3653 at 704.176 kb on - strand at 704.193 kb on + strand at 704.201 kb on - strand at 704.228 kb on + strand at 704.270 kb on + strand at 704.270 kb on + strand at 704.270 kb on + strand at 704.271 kb on - strand at 704.278 kb on - strand at 704.320 kb on + strand at 704.394 kb on - strand at 704.534 kb on + strand at 704.568 kb on + strand at 704.591 kb on + strand at 704.593 kb on + strand at 704.599 kb on - strand at 704.601 kb on - strand at 704.606 kb on + strand at 704.625 kb on - strand at 704.630 kb on - strand at 704.640 kb on - strand at 704.666 kb on - strand at 704.679 kb on + strand at 704.754 kb on + strand at 704.820 kb on - strand, within Atu3654 at 704.833 kb on - strand, within Atu3654 at 704.868 kb on + strand, within Atu3654 at 704.871 kb on + strand, within Atu3654 at 704.871 kb on + strand, within Atu3654 at 704.878 kb on + strand, within Atu3654 at 704.878 kb on + strand, within Atu3654 at 704.881 kb on - strand, within Atu3654 at 704.886 kb on - strand, within Atu3654 at 704.888 kb on - strand, within Atu3654 at 704.892 kb on + strand, within Atu3654 at 704.988 kb on - strand, within Atu3654 at 705.006 kb on + strand, within Atu3654 at 705.020 kb on + strand, within Atu3654 at 705.039 kb on + strand, within Atu3654 at 705.048 kb on - strand, within Atu3654 at 705.150 kb on - strand, within Atu3654
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Keto-D-gluconic hemicalcium salt (C) remove 702,948 + +0.1 702,951 - +0.1 702,956 - +1.3 702,965 - +0.3 702,978 + +0.4 702,978 + +0.1 703,105 - +0.1 703,128 - +0.1 703,205 - Atu3652 0.19 -0.4 703,220 + Atu3652 0.21 +0.2 703,220 - Atu3652 0.21 +1.2 703,227 - Atu3652 0.21 +0.7 703,342 + Atu3652 0.35 -0.0 703,342 - Atu3652 0.35 -0.0 703,419 + Atu3652 0.44 -1.3 703,437 - Atu3652 0.46 +0.7 703,438 - Atu3652 0.46 +0.5 703,462 - Atu3652 0.49 +0.8 703,462 - Atu3652 0.49 -0.1 703,502 - Atu3652 0.54 +0.1 703,546 + Atu3652 0.59 +1.0 703,641 + Atu3652 0.70 -0.0 703,659 + Atu3652 0.73 -0.1 703,771 + Atu3652 0.86 -1.2 703,776 + Atu3652 0.86 +2.0 703,776 + Atu3652 0.86 +0.7 703,818 - -0.0 703,932 - -1.1 703,962 - Atu3653 0.11 -0.3 703,998 + Atu3653 0.26 +0.4 704,016 - Atu3653 0.33 +0.8 704,034 + Atu3653 0.41 +0.4 704,115 - Atu3653 0.75 +0.1 704,176 - +0.1 704,193 + +0.4 704,201 - +0.3 704,228 + -0.2 704,270 + +0.5 704,270 + -0.7 704,270 + +0.1 704,271 - +0.4 704,278 - +1.1 704,320 + +0.4 704,394 - -0.3 704,534 + +0.4 704,568 + +0.4 704,591 + -0.1 704,593 + +2.4 704,599 - +0.7 704,601 - +0.2 704,606 + -0.3 704,625 - +0.1 704,630 - -0.1 704,640 - +0.2 704,666 - +0.2 704,679 + +0.4 704,754 + +0.4 704,820 - Atu3654 0.18 +0.8 704,833 - Atu3654 0.21 +0.4 704,868 + Atu3654 0.27 -0.6 704,871 + Atu3654 0.28 -0.1 704,871 + Atu3654 0.28 -0.1 704,878 + Atu3654 0.29 +0.9 704,878 + Atu3654 0.29 +0.6 704,881 - Atu3654 0.30 -0.2 704,886 - Atu3654 0.31 +0.3 704,888 - Atu3654 0.31 +3.0 704,892 + Atu3654 0.32 +0.9 704,988 - Atu3654 0.51 +0.5 705,006 + Atu3654 0.54 +0.1 705,020 + Atu3654 0.57 +0.7 705,039 + Atu3654 0.60 +1.9 705,048 - Atu3654 0.62 +0.3 705,150 - Atu3654 0.82 +0.2
Or see this region's nucleotide sequence