Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22330 and AMB_RS23665 are separated by 130 nucleotides AMB_RS23665 and AMB_RS22340 are separated by 23 nucleotides
AMB_RS22330: AMB_RS22330 - glucose-6-phosphate isomerase, at 4,819,411 to 4,821,051
_RS22330
AMB_RS23665: AMB_RS23665 - GGDEF domain-containing protein, at 4,821,182 to 4,822,918
_RS23665
AMB_RS22340: AMB_RS22340 - DNA mismatch repair protein MutL, at 4,822,942 to 4,824,765
_RS22340
Position (kb) 4821
4822
4823 Strain fitness (log2 ratio) -2
-1
0
1 at 4821.129 kb on + strand at 4821.129 kb on + strand at 4821.130 kb on - strand at 4821.131 kb on + strand at 4821.131 kb on + strand at 4821.680 kb on + strand, within AMB_RS23665 at 4821.680 kb on + strand, within AMB_RS23665 at 4821.680 kb on + strand, within AMB_RS23665 at 4821.681 kb on - strand, within AMB_RS23665 at 4821.682 kb on + strand, within AMB_RS23665 at 4821.682 kb on + strand, within AMB_RS23665 at 4821.683 kb on - strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.973 kb on + strand, within AMB_RS23665 at 4821.973 kb on + strand, within AMB_RS23665 at 4821.974 kb on - strand, within AMB_RS23665 at 4822.130 kb on + strand, within AMB_RS23665 at 4822.130 kb on + strand, within AMB_RS23665 at 4822.131 kb on - strand, within AMB_RS23665 at 4822.132 kb on + strand, within AMB_RS23665 at 4822.801 kb on + strand at 4822.874 kb on + strand at 4822.874 kb on + strand at 4822.875 kb on - strand at 4822.929 kb on + strand at 4822.929 kb on + strand at 4822.929 kb on + strand at 4822.930 kb on - strand at 4822.930 kb on - strand at 4822.941 kb on + strand at 4822.941 kb on + strand at 4822.941 kb on + strand at 4822.942 kb on - strand at 4822.942 kb on - strand at 4822.942 kb on - strand at 4823.389 kb on + strand, within AMB_RS22340 at 4823.389 kb on + strand, within AMB_RS22340 at 4823.389 kb on + strand, within AMB_RS22340 at 4823.390 kb on - strand, within AMB_RS22340 at 4823.390 kb on - strand, within AMB_RS22340 at 4823.390 kb on - strand, within AMB_RS22340 at 4823.674 kb on + strand, within AMB_RS22340 at 4823.675 kb on - strand, within AMB_RS22340 at 4823.675 kb on - strand, within AMB_RS22340 at 4823.675 kb on - strand, within AMB_RS22340 at 4823.702 kb on - strand, within AMB_RS22340 at 4823.764 kb on + strand, within AMB_RS22340 at 4823.764 kb on + strand, within AMB_RS22340
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 4,821,129 + +0.1 4,821,129 + +0.6 4,821,130 - +0.3 4,821,131 + -0.6 4,821,131 + -0.1 4,821,680 + AMB_RS23665 0.29 +0.4 4,821,680 + AMB_RS23665 0.29 -1.6 4,821,680 + AMB_RS23665 0.29 -0.1 4,821,681 - AMB_RS23665 0.29 +0.1 4,821,682 + AMB_RS23665 0.29 -0.9 4,821,682 + AMB_RS23665 0.29 +0.1 4,821,683 - AMB_RS23665 0.29 -0.6 4,821,914 + AMB_RS23665 0.42 -1.9 4,821,914 + AMB_RS23665 0.42 -0.3 4,821,914 + AMB_RS23665 0.42 -0.1 4,821,914 + AMB_RS23665 0.42 +0.1 4,821,914 + AMB_RS23665 0.42 +0.2 4,821,914 + AMB_RS23665 0.42 -0.4 4,821,915 - AMB_RS23665 0.42 -1.4 4,821,915 - AMB_RS23665 0.42 +0.0 4,821,915 - AMB_RS23665 0.42 +0.4 4,821,915 - AMB_RS23665 0.42 -0.8 4,821,973 + AMB_RS23665 0.46 -0.4 4,821,973 + AMB_RS23665 0.46 +1.0 4,821,974 - AMB_RS23665 0.46 -1.8 4,822,130 + AMB_RS23665 0.55 +0.5 4,822,130 + AMB_RS23665 0.55 -0.1 4,822,131 - AMB_RS23665 0.55 -2.3 4,822,132 + AMB_RS23665 0.55 -2.6 4,822,801 + +0.3 4,822,874 + -0.2 4,822,874 + -1.1 4,822,875 - -0.1 4,822,929 + -2.0 4,822,929 + -0.6 4,822,929 + -0.6 4,822,930 - -1.4 4,822,930 - -0.9 4,822,941 + +0.4 4,822,941 + +0.1 4,822,941 + -1.1 4,822,942 - +0.0 4,822,942 - +0.4 4,822,942 - +0.2 4,823,389 + AMB_RS22340 0.25 -0.2 4,823,389 + AMB_RS22340 0.25 -0.9 4,823,389 + AMB_RS22340 0.25 +0.1 4,823,390 - AMB_RS22340 0.25 +0.2 4,823,390 - AMB_RS22340 0.25 -1.4 4,823,390 - AMB_RS22340 0.25 +0.0 4,823,674 + AMB_RS22340 0.40 +0.5 4,823,675 - AMB_RS22340 0.40 +0.5 4,823,675 - AMB_RS22340 0.40 -0.9 4,823,675 - AMB_RS22340 0.40 +0.6 4,823,702 - AMB_RS22340 0.42 +1.4 4,823,764 + AMB_RS22340 0.45 +0.5 4,823,764 + AMB_RS22340 0.45 -0.1
Or see this region's nucleotide sequence