Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22265 and AMB_RS22270 are separated by 245 nucleotides AMB_RS22270 and AMB_RS22275 are separated by 135 nucleotides AMB_RS22275 and AMB_RS22280 are separated by 20 nucleotides AMB_RS22280 and AMB_RS22285 overlap by 1 nucleotides
AMB_RS22265: AMB_RS22265 - hypothetical protein, at 4,806,703 to 4,807,548
_RS22265
AMB_RS22270: AMB_RS22270 - NifU family protein, at 4,807,794 to 4,808,342
_RS22270
AMB_RS22275: AMB_RS22275 - universal stress protein, at 4,808,478 to 4,808,945
_RS22275
AMB_RS22280: AMB_RS22280 - hypothetical protein, at 4,808,966 to 4,809,715
_RS22280
AMB_RS22285: AMB_RS22285 - sulfite exporter TauE/SafE family protein, at 4,809,715 to 4,810,641
_RS22285
Position (kb) 4808
4809 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4807.543 kb on + strand at 4807.544 kb on - strand at 4807.590 kb on + strand at 4807.603 kb on + strand at 4807.632 kb on + strand at 4807.678 kb on + strand at 4807.696 kb on + strand at 4807.697 kb on - strand at 4807.831 kb on + strand at 4807.832 kb on - strand at 4807.832 kb on - strand at 4807.834 kb on + strand at 4808.086 kb on + strand, within AMB_RS22270 at 4808.086 kb on + strand, within AMB_RS22270 at 4808.087 kb on - strand, within AMB_RS22270 at 4808.087 kb on - strand, within AMB_RS22270 at 4808.087 kb on - strand, within AMB_RS22270 at 4808.379 kb on + strand at 4808.379 kb on + strand at 4808.380 kb on - strand at 4808.382 kb on + strand at 4808.383 kb on - strand at 4808.383 kb on - strand at 4808.383 kb on - strand at 4808.383 kb on - strand at 4808.383 kb on - strand at 4808.397 kb on - strand at 4808.397 kb on - strand at 4808.474 kb on + strand at 4808.474 kb on + strand at 4808.474 kb on + strand at 4808.475 kb on - strand at 4808.479 kb on + strand at 4808.479 kb on + strand at 4808.479 kb on + strand at 4808.480 kb on - strand at 4808.480 kb on - strand at 4808.552 kb on + strand, within AMB_RS22275 at 4808.554 kb on + strand, within AMB_RS22275 at 4808.555 kb on - strand, within AMB_RS22275 at 4808.555 kb on - strand, within AMB_RS22275 at 4808.555 kb on - strand, within AMB_RS22275 at 4808.555 kb on - strand, within AMB_RS22275 at 4808.555 kb on - strand, within AMB_RS22275 at 4808.646 kb on - strand, within AMB_RS22275 at 4808.809 kb on + strand, within AMB_RS22275 at 4808.809 kb on + strand, within AMB_RS22275 at 4808.810 kb on - strand, within AMB_RS22275 at 4809.147 kb on + strand, within AMB_RS22280 at 4809.147 kb on + strand, within AMB_RS22280 at 4809.148 kb on - strand, within AMB_RS22280 at 4809.148 kb on - strand, within AMB_RS22280 at 4809.148 kb on - strand, within AMB_RS22280 at 4809.160 kb on + strand, within AMB_RS22280 at 4809.160 kb on + strand, within AMB_RS22280 at 4809.161 kb on - strand, within AMB_RS22280 at 4809.161 kb on - strand, within AMB_RS22280 at 4809.161 kb on - strand, within AMB_RS22280 at 4809.162 kb on + strand, within AMB_RS22280 at 4809.162 kb on + strand, within AMB_RS22280 at 4809.162 kb on + strand, within AMB_RS22280 at 4809.162 kb on + strand, within AMB_RS22280 at 4809.162 kb on + strand, within AMB_RS22280 at 4809.162 kb on + strand, within AMB_RS22280 at 4809.162 kb on + strand, within AMB_RS22280 at 4809.163 kb on - strand, within AMB_RS22280 at 4809.163 kb on - strand, within AMB_RS22280 at 4809.163 kb on - strand, within AMB_RS22280 at 4809.163 kb on - strand, within AMB_RS22280 at 4809.163 kb on - strand, within AMB_RS22280 at 4809.163 kb on - strand, within AMB_RS22280 at 4809.423 kb on + strand, within AMB_RS22280 at 4809.424 kb on - strand, within AMB_RS22280
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 4,807,543 + +0.9 4,807,544 - -0.6 4,807,590 + -2.6 4,807,603 + +1.0 4,807,632 + +1.4 4,807,678 + -2.0 4,807,696 + -0.3 4,807,697 - -1.1 4,807,831 + -2.6 4,807,832 - -2.6 4,807,832 - -4.6 4,807,834 + -1.1 4,808,086 + AMB_RS22270 0.53 -0.9 4,808,086 + AMB_RS22270 0.53 -1.0 4,808,087 - AMB_RS22270 0.53 -2.6 4,808,087 - AMB_RS22270 0.53 +1.4 4,808,087 - AMB_RS22270 0.53 -3.0 4,808,379 + -1.9 4,808,379 + -4.1 4,808,380 - -2.3 4,808,382 + -1.4 4,808,383 - -0.9 4,808,383 - -1.2 4,808,383 - -2.0 4,808,383 - -1.4 4,808,383 - +0.3 4,808,397 - -0.9 4,808,397 - -0.4 4,808,474 + -1.6 4,808,474 + +0.5 4,808,474 + -0.9 4,808,475 - +0.4 4,808,479 + -0.3 4,808,479 + -2.1 4,808,479 + -1.6 4,808,480 - -0.2 4,808,480 - -0.6 4,808,552 + AMB_RS22275 0.16 -0.6 4,808,554 + AMB_RS22275 0.16 -1.7 4,808,555 - AMB_RS22275 0.16 -1.1 4,808,555 - AMB_RS22275 0.16 -1.6 4,808,555 - AMB_RS22275 0.16 -1.4 4,808,555 - AMB_RS22275 0.16 +0.3 4,808,555 - AMB_RS22275 0.16 -1.4 4,808,646 - AMB_RS22275 0.36 -0.5 4,808,809 + AMB_RS22275 0.71 +0.4 4,808,809 + AMB_RS22275 0.71 -1.0 4,808,810 - AMB_RS22275 0.71 -0.4 4,809,147 + AMB_RS22280 0.24 -2.8 4,809,147 + AMB_RS22280 0.24 -2.0 4,809,148 - AMB_RS22280 0.24 -2.6 4,809,148 - AMB_RS22280 0.24 -2.6 4,809,148 - AMB_RS22280 0.24 -2.5 4,809,160 + AMB_RS22280 0.26 -0.9 4,809,160 + AMB_RS22280 0.26 -0.5 4,809,161 - AMB_RS22280 0.26 -1.9 4,809,161 - AMB_RS22280 0.26 -1.1 4,809,161 - AMB_RS22280 0.26 -1.1 4,809,162 + AMB_RS22280 0.26 -1.2 4,809,162 + AMB_RS22280 0.26 -1.2 4,809,162 + AMB_RS22280 0.26 -3.9 4,809,162 + AMB_RS22280 0.26 -2.0 4,809,162 + AMB_RS22280 0.26 -1.9 4,809,162 + AMB_RS22280 0.26 -2.8 4,809,162 + AMB_RS22280 0.26 -1.8 4,809,163 - AMB_RS22280 0.26 -2.0 4,809,163 - AMB_RS22280 0.26 -1.9 4,809,163 - AMB_RS22280 0.26 -3.4 4,809,163 - AMB_RS22280 0.26 -0.9 4,809,163 - AMB_RS22280 0.26 -3.0 4,809,163 - AMB_RS22280 0.26 -2.4 4,809,423 + AMB_RS22280 0.61 -1.5 4,809,424 - AMB_RS22280 0.61 +1.4
Or see this region's nucleotide sequence