Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21405 and AMB_RS21410 overlap by 14 nucleotides AMB_RS21410 and AMB_RS21415 are separated by 32 nucleotides AMB_RS21415 and AMB_RS21420 are separated by 186 nucleotides
AMB_RS21405: AMB_RS21405 - hypothetical protein, at 4,640,810 to 4,642,447
_RS21405
AMB_RS21410: AMB_RS21410 - hypothetical protein, at 4,642,434 to 4,642,703
_RS21410
AMB_RS21415: AMB_RS21415 - hypothetical protein, at 4,642,736 to 4,643,473
_RS21415
AMB_RS21420: AMB_RS21420 - MBL fold metallo-hydrolase, at 4,643,660 to 4,644,418
_RS21420
Position (kb) 4642
4643 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4641.548 kb on + strand, within AMB_RS21405 at 4641.548 kb on + strand, within AMB_RS21405 at 4641.554 kb on + strand, within AMB_RS21405 at 4641.554 kb on + strand, within AMB_RS21405 at 4641.554 kb on + strand, within AMB_RS21405 at 4641.555 kb on - strand, within AMB_RS21405 at 4641.662 kb on + strand, within AMB_RS21405 at 4641.662 kb on + strand, within AMB_RS21405 at 4641.662 kb on + strand, within AMB_RS21405 at 4641.662 kb on + strand, within AMB_RS21405 at 4641.824 kb on - strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.034 kb on + strand, within AMB_RS21405 at 4642.035 kb on - strand, within AMB_RS21405 at 4642.035 kb on - strand, within AMB_RS21405 at 4642.035 kb on - strand, within AMB_RS21405 at 4642.035 kb on - strand, within AMB_RS21405 at 4642.035 kb on - strand, within AMB_RS21405 at 4642.035 kb on - strand, within AMB_RS21405 at 4642.151 kb on + strand, within AMB_RS21405 at 4642.701 kb on + strand at 4642.701 kb on + strand at 4642.702 kb on - strand at 4643.084 kb on + strand, within AMB_RS21415 at 4643.084 kb on + strand, within AMB_RS21415 at 4643.084 kb on + strand, within AMB_RS21415 at 4643.084 kb on + strand, within AMB_RS21415 at 4643.085 kb on - strand, within AMB_RS21415 at 4643.085 kb on - strand, within AMB_RS21415 at 4643.085 kb on - strand, within AMB_RS21415 at 4643.085 kb on - strand, within AMB_RS21415 at 4643.403 kb on - strand at 4643.487 kb on + strand at 4643.487 kb on + strand at 4643.487 kb on + strand at 4643.488 kb on - strand at 4643.488 kb on - strand at 4643.488 kb on - strand at 4643.488 kb on - strand at 4643.488 kb on - strand at 4643.564 kb on - strand at 4643.564 kb on - strand at 4643.564 kb on - strand at 4643.564 kb on - strand at 4643.661 kb on + strand at 4643.661 kb on + strand at 4643.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 4,641,548 + AMB_RS21405 0.45 -1.6 4,641,548 + AMB_RS21405 0.45 -3.0 4,641,554 + AMB_RS21405 0.45 +0.4 4,641,554 + AMB_RS21405 0.45 +0.4 4,641,554 + AMB_RS21405 0.45 +1.4 4,641,555 - AMB_RS21405 0.45 -0.9 4,641,662 + AMB_RS21405 0.52 -0.1 4,641,662 + AMB_RS21405 0.52 +0.5 4,641,662 + AMB_RS21405 0.52 +0.2 4,641,662 + AMB_RS21405 0.52 +0.2 4,641,824 - AMB_RS21405 0.62 -0.9 4,642,034 + AMB_RS21405 0.75 -0.9 4,642,034 + AMB_RS21405 0.75 -0.1 4,642,034 + AMB_RS21405 0.75 +1.3 4,642,034 + AMB_RS21405 0.75 -1.9 4,642,034 + AMB_RS21405 0.75 +0.9 4,642,034 + AMB_RS21405 0.75 -0.2 4,642,034 + AMB_RS21405 0.75 +0.4 4,642,034 + AMB_RS21405 0.75 -2.7 4,642,035 - AMB_RS21405 0.75 +0.5 4,642,035 - AMB_RS21405 0.75 +0.1 4,642,035 - AMB_RS21405 0.75 -0.5 4,642,035 - AMB_RS21405 0.75 -0.2 4,642,035 - AMB_RS21405 0.75 +0.3 4,642,035 - AMB_RS21405 0.75 -0.3 4,642,151 + AMB_RS21405 0.82 +1.4 4,642,701 + +0.0 4,642,701 + +0.3 4,642,702 - +0.4 4,643,084 + AMB_RS21415 0.47 -0.2 4,643,084 + AMB_RS21415 0.47 +0.1 4,643,084 + AMB_RS21415 0.47 +0.4 4,643,084 + AMB_RS21415 0.47 -1.6 4,643,085 - AMB_RS21415 0.47 +0.4 4,643,085 - AMB_RS21415 0.47 +0.3 4,643,085 - AMB_RS21415 0.47 +0.1 4,643,085 - AMB_RS21415 0.47 -1.7 4,643,403 - -2.0 4,643,487 + -0.2 4,643,487 + -1.4 4,643,487 + -1.7 4,643,488 - -1.6 4,643,488 - +0.2 4,643,488 - +0.8 4,643,488 - +0.4 4,643,488 - -1.2 4,643,564 - -1.4 4,643,564 - +0.3 4,643,564 - +0.2 4,643,564 - +0.2 4,643,661 + -0.2 4,643,661 + +0.1 4,643,662 - -0.2
Or see this region's nucleotide sequence