Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21090 and AMB_RS21095 are separated by 7 nucleotides AMB_RS21095 and AMB_RS21100 are separated by 101 nucleotides AMB_RS21100 and AMB_RS21105 overlap by 58 nucleotides AMB_RS21105 and AMB_RS21110 overlap by 4 nucleotides
AMB_RS21090: AMB_RS21090 - prephenate dehydratase, at 4,583,384 to 4,584,253
_RS21090
AMB_RS21095: AMB_RS21095 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 4,584,261 to 4,585,001
_RS21095
AMB_RS21100: AMB_RS21100 - histidinol-phosphatase, at 4,585,103 to 4,585,879
_RS21100
AMB_RS21105: AMB_RS21105 - endonuclease III, at 4,585,822 to 4,586,511
_RS21105
AMB_RS21110: AMB_RS21110 - hemerythrin, at 4,586,508 to 4,586,924
_RS21110
Position (kb) 4585
4586 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4585.026 kb on - strand at 4585.026 kb on - strand at 4585.026 kb on - strand at 4585.030 kb on - strand at 4585.030 kb on - strand at 4585.030 kb on - strand at 4585.030 kb on - strand at 4585.033 kb on - strand at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.904 kb on - strand, within AMB_RS21105 at 4585.951 kb on + strand, within AMB_RS21105 at 4585.952 kb on - strand, within AMB_RS21105 at 4585.963 kb on + strand, within AMB_RS21105 at 4585.964 kb on - strand, within AMB_RS21105 at 4585.964 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.186 kb on + strand, within AMB_RS21105 at 4586.186 kb on + strand, within AMB_RS21105 at 4586.186 kb on + strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.428 kb on + strand, within AMB_RS21105 at 4586.429 kb on - strand, within AMB_RS21105 at 4586.430 kb on + strand, within AMB_RS21105 at 4586.430 kb on + strand, within AMB_RS21105 at 4586.431 kb on - strand, within AMB_RS21105 at 4586.431 kb on - strand, within AMB_RS21105 at 4586.519 kb on - strand at 4586.533 kb on + strand at 4586.534 kb on - strand at 4586.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 4,585,026 - +0.1 4,585,026 - -1.6 4,585,026 - +0.3 4,585,030 - +0.1 4,585,030 - -0.2 4,585,030 - -0.0 4,585,030 - -3.2 4,585,033 - -0.3 4,585,903 + AMB_RS21105 0.12 -0.1 4,585,903 + AMB_RS21105 0.12 -1.4 4,585,903 + AMB_RS21105 0.12 -0.1 4,585,903 + AMB_RS21105 0.12 -3.7 4,585,904 - AMB_RS21105 0.12 +0.4 4,585,951 + AMB_RS21105 0.19 -0.9 4,585,952 - AMB_RS21105 0.19 -1.6 4,585,963 + AMB_RS21105 0.20 +0.1 4,585,964 - AMB_RS21105 0.21 -1.2 4,585,964 - AMB_RS21105 0.21 +1.0 4,586,120 - AMB_RS21105 0.43 -0.0 4,586,120 - AMB_RS21105 0.43 -0.5 4,586,120 - AMB_RS21105 0.43 -1.4 4,586,120 - AMB_RS21105 0.43 -0.5 4,586,186 + AMB_RS21105 0.53 -0.5 4,586,186 + AMB_RS21105 0.53 -2.3 4,586,186 + AMB_RS21105 0.53 +0.6 4,586,187 - AMB_RS21105 0.53 +0.1 4,586,187 - AMB_RS21105 0.53 +0.2 4,586,187 - AMB_RS21105 0.53 -2.4 4,586,187 - AMB_RS21105 0.53 +0.1 4,586,428 + AMB_RS21105 0.88 -0.9 4,586,429 - AMB_RS21105 0.88 +0.1 4,586,430 + AMB_RS21105 0.88 -1.2 4,586,430 + AMB_RS21105 0.88 -1.9 4,586,431 - AMB_RS21105 0.88 +0.4 4,586,431 - AMB_RS21105 0.88 -0.6 4,586,519 - +0.6 4,586,533 + +0.4 4,586,534 - +0.9 4,586,534 - -1.6
Or see this region's nucleotide sequence