Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20840 and AMB_RS20845 are separated by 373 nucleotides AMB_RS20845 and AMB_RS20850 are separated by 202 nucleotides
AMB_RS20840: AMB_RS20840 - S-methyl-5'-thioadenosine phosphorylase, at 4,524,425 to 4,525,312
_RS20840
AMB_RS20845: AMB_RS20845 - hypothetical protein, at 4,525,686 to 4,526,954
_RS20845
AMB_RS20850: AMB_RS20850 - S-methyl-5-thioribose-1-phosphate isomerase, at 4,527,157 to 4,528,245
_RS20850
Position (kb) 4525
4526
4527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4524.814 kb on + strand, within AMB_RS20840 at 4524.814 kb on + strand, within AMB_RS20840 at 4524.814 kb on + strand, within AMB_RS20840 at 4524.815 kb on - strand, within AMB_RS20840 at 4524.815 kb on - strand, within AMB_RS20840 at 4524.815 kb on - strand, within AMB_RS20840 at 4524.815 kb on - strand, within AMB_RS20840 at 4524.908 kb on + strand, within AMB_RS20840 at 4524.908 kb on + strand, within AMB_RS20840 at 4524.908 kb on + strand, within AMB_RS20840 at 4524.908 kb on + strand, within AMB_RS20840 at 4524.908 kb on + strand, within AMB_RS20840 at 4524.908 kb on + strand, within AMB_RS20840 at 4524.908 kb on + strand, within AMB_RS20840 at 4524.909 kb on - strand, within AMB_RS20840 at 4524.909 kb on - strand, within AMB_RS20840 at 4524.909 kb on - strand, within AMB_RS20840 at 4524.909 kb on - strand, within AMB_RS20840 at 4524.909 kb on - strand, within AMB_RS20840 at 4524.909 kb on - strand, within AMB_RS20840 at 4524.959 kb on + strand, within AMB_RS20840 at 4524.960 kb on - strand, within AMB_RS20840 at 4525.037 kb on + strand, within AMB_RS20840 at 4525.038 kb on - strand, within AMB_RS20840 at 4525.064 kb on + strand, within AMB_RS20840 at 4525.065 kb on - strand, within AMB_RS20840 at 4525.311 kb on - strand at 4525.311 kb on - strand at 4525.323 kb on + strand at 4525.324 kb on - strand at 4525.591 kb on + strand at 4525.592 kb on - strand at 4525.623 kb on + strand at 4525.623 kb on + strand at 4525.624 kb on - strand at 4525.624 kb on - strand at 4525.624 kb on - strand at 4525.624 kb on - strand at 4525.625 kb on + strand at 4525.625 kb on + strand at 4525.625 kb on + strand at 4525.626 kb on - strand at 4525.626 kb on - strand at 4525.626 kb on - strand at 4525.722 kb on + strand at 4525.722 kb on + strand at 4525.722 kb on + strand at 4525.722 kb on + strand at 4525.723 kb on - strand at 4525.723 kb on - strand at 4525.723 kb on - strand at 4525.723 kb on - strand at 4525.761 kb on + strand at 4525.762 kb on - strand at 4525.786 kb on + strand at 4525.786 kb on + strand at 4525.786 kb on + strand at 4525.786 kb on + strand at 4525.786 kb on + strand at 4525.787 kb on - strand at 4525.787 kb on - strand at 4525.787 kb on - strand at 4525.787 kb on - strand at 4525.816 kb on + strand, within AMB_RS20845 at 4525.856 kb on - strand, within AMB_RS20845 at 4525.856 kb on - strand, within AMB_RS20845 at 4525.994 kb on - strand, within AMB_RS20845 at 4526.223 kb on - strand, within AMB_RS20845 at 4526.250 kb on + strand, within AMB_RS20845 at 4526.250 kb on + strand, within AMB_RS20845 at 4526.255 kb on + strand, within AMB_RS20845 at 4526.303 kb on + strand, within AMB_RS20845 at 4526.332 kb on + strand, within AMB_RS20845 at 4526.332 kb on + strand, within AMB_RS20845 at 4526.551 kb on + strand, within AMB_RS20845 at 4526.551 kb on + strand, within AMB_RS20845 at 4526.552 kb on - strand, within AMB_RS20845 at 4526.552 kb on - strand, within AMB_RS20845 at 4526.552 kb on - strand, within AMB_RS20845 at 4526.611 kb on - strand, within AMB_RS20845 at 4526.611 kb on - strand, within AMB_RS20845 at 4526.611 kb on - strand, within AMB_RS20845 at 4526.611 kb on - strand, within AMB_RS20845 at 4526.670 kb on + strand, within AMB_RS20845 at 4526.671 kb on - strand, within AMB_RS20845 at 4526.679 kb on + strand, within AMB_RS20845 at 4526.679 kb on + strand, within AMB_RS20845 at 4526.679 kb on + strand, within AMB_RS20845 at 4526.679 kb on + strand, within AMB_RS20845 at 4526.679 kb on + strand, within AMB_RS20845 at 4526.734 kb on - strand, within AMB_RS20845 at 4526.772 kb on + strand, within AMB_RS20845 at 4526.772 kb on + strand, within AMB_RS20845 at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.897 kb on + strand at 4526.898 kb on - strand at 4526.898 kb on - strand at 4526.898 kb on - strand at 4526.898 kb on - strand at 4526.898 kb on - strand at 4526.902 kb on - strand at 4526.902 kb on - strand at 4526.939 kb on + strand at 4526.939 kb on + strand at 4526.940 kb on - strand at 4527.124 kb on + strand at 4527.403 kb on + strand, within AMB_RS20850 at 4527.403 kb on + strand, within AMB_RS20850 at 4527.403 kb on + strand, within AMB_RS20850 at 4527.403 kb on + strand, within AMB_RS20850 at 4527.514 kb on + strand, within AMB_RS20850 at 4527.694 kb on + strand, within AMB_RS20850 at 4527.694 kb on + strand, within AMB_RS20850 at 4527.694 kb on + strand, within AMB_RS20850 at 4527.694 kb on + strand, within AMB_RS20850 at 4527.694 kb on + strand, within AMB_RS20850 at 4527.694 kb on + strand, within AMB_RS20850 at 4527.695 kb on - strand, within AMB_RS20850 at 4527.695 kb on - strand, within AMB_RS20850 at 4527.807 kb on + strand, within AMB_RS20850 at 4527.807 kb on + strand, within AMB_RS20850 at 4527.925 kb on + strand, within AMB_RS20850 at 4527.925 kb on + strand, within AMB_RS20850 at 4527.925 kb on + strand, within AMB_RS20850 at 4527.925 kb on + strand, within AMB_RS20850 at 4527.925 kb on + strand, within AMB_RS20850
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 4,524,814 + AMB_RS20840 0.44 +0.4 4,524,814 + AMB_RS20840 0.44 -1.7 4,524,814 + AMB_RS20840 0.44 -0.1 4,524,815 - AMB_RS20840 0.44 +0.1 4,524,815 - AMB_RS20840 0.44 -0.1 4,524,815 - AMB_RS20840 0.44 +0.1 4,524,815 - AMB_RS20840 0.44 +1.4 4,524,908 + AMB_RS20840 0.54 -0.2 4,524,908 + AMB_RS20840 0.54 +1.0 4,524,908 + AMB_RS20840 0.54 -0.2 4,524,908 + AMB_RS20840 0.54 -0.9 4,524,908 + AMB_RS20840 0.54 +0.4 4,524,908 + AMB_RS20840 0.54 -1.4 4,524,908 + AMB_RS20840 0.54 -0.2 4,524,909 - AMB_RS20840 0.55 +0.0 4,524,909 - AMB_RS20840 0.55 +0.8 4,524,909 - AMB_RS20840 0.55 -1.1 4,524,909 - AMB_RS20840 0.55 +0.4 4,524,909 - AMB_RS20840 0.55 +0.1 4,524,909 - AMB_RS20840 0.55 +0.2 4,524,959 + AMB_RS20840 0.60 +0.4 4,524,960 - AMB_RS20840 0.60 -0.2 4,525,037 + AMB_RS20840 0.69 +0.3 4,525,038 - AMB_RS20840 0.69 +0.1 4,525,064 + AMB_RS20840 0.72 +1.0 4,525,065 - AMB_RS20840 0.72 +0.1 4,525,311 - -1.2 4,525,311 - -0.1 4,525,323 + +1.4 4,525,324 - -0.1 4,525,591 + -0.0 4,525,592 - -0.9 4,525,623 + +0.4 4,525,623 + -1.2 4,525,624 - -2.2 4,525,624 - +0.6 4,525,624 - +1.4 4,525,624 - -1.8 4,525,625 + +1.4 4,525,625 + +0.3 4,525,625 + +0.2 4,525,626 - -0.6 4,525,626 - +0.5 4,525,626 - -2.7 4,525,722 + -0.6 4,525,722 + +0.3 4,525,722 + +0.4 4,525,722 + -0.2 4,525,723 - -1.8 4,525,723 - +0.1 4,525,723 - +2.3 4,525,723 - -0.6 4,525,761 + -1.6 4,525,762 - +0.0 4,525,786 + -3.7 4,525,786 + -0.4 4,525,786 + -1.8 4,525,786 + +0.1 4,525,786 + +0.4 4,525,787 - -0.2 4,525,787 - +0.0 4,525,787 - -0.2 4,525,787 - +1.4 4,525,816 + AMB_RS20845 0.10 +0.0 4,525,856 - AMB_RS20845 0.13 -0.9 4,525,856 - AMB_RS20845 0.13 -1.2 4,525,994 - AMB_RS20845 0.24 +0.2 4,526,223 - AMB_RS20845 0.42 -0.2 4,526,250 + AMB_RS20845 0.44 +0.2 4,526,250 + AMB_RS20845 0.44 -0.0 4,526,255 + AMB_RS20845 0.45 -1.4 4,526,303 + AMB_RS20845 0.49 +0.3 4,526,332 + AMB_RS20845 0.51 -1.8 4,526,332 + AMB_RS20845 0.51 -0.4 4,526,551 + AMB_RS20845 0.68 +0.2 4,526,551 + AMB_RS20845 0.68 -2.3 4,526,552 - AMB_RS20845 0.68 -1.6 4,526,552 - AMB_RS20845 0.68 -1.9 4,526,552 - AMB_RS20845 0.68 -0.0 4,526,611 - AMB_RS20845 0.73 +0.0 4,526,611 - AMB_RS20845 0.73 -1.2 4,526,611 - AMB_RS20845 0.73 -0.0 4,526,611 - AMB_RS20845 0.73 +0.2 4,526,670 + AMB_RS20845 0.78 -0.2 4,526,671 - AMB_RS20845 0.78 -0.1 4,526,679 + AMB_RS20845 0.78 -0.4 4,526,679 + AMB_RS20845 0.78 +0.5 4,526,679 + AMB_RS20845 0.78 -0.2 4,526,679 + AMB_RS20845 0.78 -0.7 4,526,679 + AMB_RS20845 0.78 +0.1 4,526,734 - AMB_RS20845 0.83 -1.4 4,526,772 + AMB_RS20845 0.86 +0.1 4,526,772 + AMB_RS20845 0.86 +0.4 4,526,897 + +0.5 4,526,897 + +0.3 4,526,897 + -0.9 4,526,897 + +0.6 4,526,897 + -1.2 4,526,897 + -1.6 4,526,897 + -0.7 4,526,897 + -1.8 4,526,897 + +0.8 4,526,898 - -1.9 4,526,898 - +0.1 4,526,898 - +0.3 4,526,898 - -3.1 4,526,898 - -0.3 4,526,902 - +0.4 4,526,902 - -1.9 4,526,939 + +0.1 4,526,939 + -1.6 4,526,940 - +0.3 4,527,124 + -1.2 4,527,403 + AMB_RS20850 0.23 +0.6 4,527,403 + AMB_RS20850 0.23 -1.2 4,527,403 + AMB_RS20850 0.23 +0.7 4,527,403 + AMB_RS20850 0.23 +0.4 4,527,514 + AMB_RS20850 0.33 -1.4 4,527,694 + AMB_RS20850 0.49 -1.2 4,527,694 + AMB_RS20850 0.49 -0.9 4,527,694 + AMB_RS20850 0.49 +0.3 4,527,694 + AMB_RS20850 0.49 +0.6 4,527,694 + AMB_RS20850 0.49 -0.6 4,527,694 + AMB_RS20850 0.49 -0.0 4,527,695 - AMB_RS20850 0.49 +0.0 4,527,695 - AMB_RS20850 0.49 -1.2 4,527,807 + AMB_RS20850 0.60 -0.9 4,527,807 + AMB_RS20850 0.60 -2.3 4,527,925 + AMB_RS20850 0.71 -0.6 4,527,925 + AMB_RS20850 0.71 -1.6 4,527,925 + AMB_RS20850 0.71 -1.9 4,527,925 + AMB_RS20850 0.71 -0.1 4,527,925 + AMB_RS20850 0.71 -0.9
Or see this region's nucleotide sequence