Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20695 and AMB_RS20700 overlap by 14 nucleotides AMB_RS20700 and AMB_RS20705 overlap by 4 nucleotides AMB_RS20705 and AMB_RS20710 overlap by 4 nucleotides AMB_RS20710 and AMB_RS20715 are separated by 41 nucleotides
AMB_RS20695: AMB_RS20695 - 3-deoxy-D-manno-octulosonic acid transferase, at 4,494,463 to 4,495,737
_RS20695
AMB_RS20700: AMB_RS20700 - tetraacyldisaccharide 4'-kinase, at 4,495,724 to 4,496,701
_RS20700
AMB_RS20705: AMB_RS20705 - lauroyl acyltransferase, at 4,496,698 to 4,497,567
_RS20705
AMB_RS20710: AMB_RS20710 - hypothetical protein, at 4,497,564 to 4,498,484
_RS20710
AMB_RS20715: AMB_RS20715 - hypothetical protein, at 4,498,526 to 4,499,626
_RS20715
Position (kb) 4496
4497
4498 Strain fitness (log2 ratio) -2
-1
0
1 at 4496.664 kb on + strand at 4497.585 kb on + strand at 4497.725 kb on - strand, within AMB_RS20710 at 4497.725 kb on - strand, within AMB_RS20710 at 4497.792 kb on + strand, within AMB_RS20710 at 4497.792 kb on + strand, within AMB_RS20710 at 4497.792 kb on + strand, within AMB_RS20710 at 4497.793 kb on - strand, within AMB_RS20710 at 4498.014 kb on + strand, within AMB_RS20710 at 4498.015 kb on - strand, within AMB_RS20710 at 4498.015 kb on - strand, within AMB_RS20710 at 4498.015 kb on - strand, within AMB_RS20710 at 4498.469 kb on - strand at 4498.517 kb on + strand at 4498.517 kb on + strand at 4498.518 kb on - strand at 4498.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 4,496,664 + -0.3 4,497,585 + -1.4 4,497,725 - AMB_RS20710 0.17 -0.3 4,497,725 - AMB_RS20710 0.17 -0.5 4,497,792 + AMB_RS20710 0.25 -0.5 4,497,792 + AMB_RS20710 0.25 +0.2 4,497,792 + AMB_RS20710 0.25 +0.9 4,497,793 - AMB_RS20710 0.25 +0.2 4,498,014 + AMB_RS20710 0.49 -0.4 4,498,015 - AMB_RS20710 0.49 -1.9 4,498,015 - AMB_RS20710 0.49 +0.3 4,498,015 - AMB_RS20710 0.49 -0.2 4,498,469 - +1.2 4,498,517 + +1.0 4,498,517 + +0.3 4,498,518 - -0.3 4,498,518 - -0.2
Or see this region's nucleotide sequence