Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19870

Experiment: 30_an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19865 and AMB_RS19870 overlap by 4 nucleotidesAMB_RS19870 and AMB_RS19875 are separated by 304 nucleotides AMB_RS19865: AMB_RS19865 - 3-dehydroquinate synthase, at 4,337,078 to 4,338,193 _RS19865 AMB_RS19870: AMB_RS19870 - shikimate kinase, at 4,338,190 to 4,338,765 _RS19870 AMB_RS19875: AMB_RS19875 - hypothetical protein, at 4,339,070 to 4,340,848 _RS19875 Position (kb) 4338 4339Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4338.194 kb on - strandat 4338.216 kb on - strandat 4338.216 kb on - strandat 4338.862 kb on - strandat 4338.862 kb on - strandat 4338.862 kb on - strandat 4338.930 kb on - strandat 4339.211 kb on - strandat 4339.211 kb on - strandat 4339.228 kb on + strandat 4339.229 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
remove
4,338,194 - +0.8
4,338,216 - +0.2
4,338,216 - -2.4
4,338,862 - -0.5
4,338,862 - -0.6
4,338,862 - -0.2
4,338,930 - -1.0
4,339,211 - -1.7
4,339,211 - -2.8
4,339,228 + +0.6
4,339,229 - -4.3

Or see this region's nucleotide sequence