Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17745

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS17740 and AMB_RS17745 are separated by 13 nucleotidesAMB_RS17745 and AMB_RS17750 are separated by 54 nucleotides AMB_RS17740: AMB_RS17740 - acetolactate synthase 3 large subunit, at 3,853,913 to 3,855,679 _RS17740 AMB_RS17745: AMB_RS17745 - acetolactate synthase small subunit, at 3,855,693 to 3,856,208 _RS17745 AMB_RS17750: AMB_RS17750 - ketol-acid reductoisomerase, at 3,856,263 to 3,857,282 _RS17750 Position (kb) 3855 3856 3857Strain fitness (log2 ratio) -1 0 1at 3855.677 kb on + strandat 3856.206 kb on + strandat 3856.206 kb on + strandat 3856.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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3,855,677 + -0.2
3,856,206 + -0.0
3,856,206 + +0.2
3,856,206 + +0.0

Or see this region's nucleotide sequence