Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16345

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16340 and AMB_RS16345 are separated by 124 nucleotidesAMB_RS16345 and AMB_RS16350 are separated by 3 nucleotides AMB_RS16340: AMB_RS16340 - penicillin-binding protein 1A, at 3,497,408 to 3,499,966 _RS16340 AMB_RS16345: AMB_RS16345 - hypothetical protein, at 3,500,091 to 3,500,420 _RS16345 AMB_RS16350: AMB_RS16350 - N-acetylmuramoyl-L-alanine amidase, at 3,500,424 to 3,502,118 _RS16350 Position (kb) 3500 3501Strain fitness (log2 ratio) -2 -1 0 1at 3499.840 kb on - strandat 3500.045 kb on + strandat 3500.278 kb on + strand, within AMB_RS16345at 3500.278 kb on + strand, within AMB_RS16345at 3500.279 kb on - strand, within AMB_RS16345at 3500.425 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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3,499,840 - -0.7
3,500,045 + -2.0
3,500,278 + AMB_RS16345 0.57 -0.2
3,500,278 + AMB_RS16345 0.57 +0.7
3,500,279 - AMB_RS16345 0.57 -0.2
3,500,425 + +0.0

Or see this region's nucleotide sequence