Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS16265 and AMB_RS16270 are separated by 127 nucleotides AMB_RS16270 and AMB_RS16275 are separated by 64 nucleotides AMB_RS16275 and AMB_RS16280 overlap by 4 nucleotides AMB_RS16280 and AMB_RS16285 are separated by 184 nucleotides
AMB_RS16265: AMB_RS16265 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,485,104 to 3,485,853
_RS16265
AMB_RS16270: AMB_RS16270 - organic solvent ABC transporter, at 3,485,981 to 3,486,601
_RS16270
AMB_RS16275: AMB_RS16275 - metallophosphoesterase, at 3,486,666 to 3,487,484
_RS16275
AMB_RS16280: AMB_RS16280 - 5-formyltetrahydrofolate cyclo-ligase, at 3,487,481 to 3,488,062
_RS16280
AMB_RS16285: AMB_RS16285 - cell division protein ZapA, at 3,488,247 to 3,488,573
_RS16285
Position (kb) 3486
3487
3488 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3485.900 kb on - strand at 3486.294 kb on + strand, within AMB_RS16270 at 3486.294 kb on + strand, within AMB_RS16270 at 3486.294 kb on + strand, within AMB_RS16270 at 3486.295 kb on - strand, within AMB_RS16270 at 3486.295 kb on - strand, within AMB_RS16270 at 3486.334 kb on + strand, within AMB_RS16270 at 3486.334 kb on + strand, within AMB_RS16270 at 3486.335 kb on - strand, within AMB_RS16270 at 3486.335 kb on - strand, within AMB_RS16270 at 3486.408 kb on + strand, within AMB_RS16270 at 3486.640 kb on - strand at 3486.640 kb on - strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.641 kb on + strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3486.642 kb on - strand at 3487.471 kb on + strand at 3487.471 kb on + strand at 3487.471 kb on + strand at 3487.472 kb on - strand at 3487.472 kb on - strand at 3487.472 kb on - strand at 3487.521 kb on - strand at 3487.521 kb on - strand at 3487.521 kb on - strand at 3487.641 kb on + strand, within AMB_RS16280 at 3487.641 kb on + strand, within AMB_RS16280 at 3487.642 kb on - strand, within AMB_RS16280 at 3487.642 kb on - strand, within AMB_RS16280 at 3487.642 kb on - strand, within AMB_RS16280 at 3487.838 kb on + strand, within AMB_RS16280 at 3487.838 kb on + strand, within AMB_RS16280 at 3487.838 kb on + strand, within AMB_RS16280 at 3487.839 kb on - strand, within AMB_RS16280 at 3487.905 kb on + strand, within AMB_RS16280 at 3488.140 kb on - strand at 3488.142 kb on - strand at 3488.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 3,485,900 - -0.0 3,486,294 + AMB_RS16270 0.50 +0.4 3,486,294 + AMB_RS16270 0.50 +0.2 3,486,294 + AMB_RS16270 0.50 +0.6 3,486,295 - AMB_RS16270 0.51 +0.4 3,486,295 - AMB_RS16270 0.51 -1.3 3,486,334 + AMB_RS16270 0.57 +1.1 3,486,334 + AMB_RS16270 0.57 -2.3 3,486,335 - AMB_RS16270 0.57 +0.4 3,486,335 - AMB_RS16270 0.57 -0.6 3,486,408 + AMB_RS16270 0.69 -0.3 3,486,640 - -0.7 3,486,640 - -1.7 3,486,641 + -1.5 3,486,641 + -0.3 3,486,641 + -0.3 3,486,641 + +0.1 3,486,641 + -1.7 3,486,641 + +1.3 3,486,641 + -0.2 3,486,641 + -0.7 3,486,641 + -0.7 3,486,642 - -0.1 3,486,642 - -0.5 3,486,642 - -0.7 3,486,642 - -3.3 3,486,642 - -0.6 3,486,642 - -0.1 3,486,642 - +0.2 3,486,642 - -1.0 3,486,642 - -0.2 3,486,642 - +0.0 3,486,642 - -0.2 3,486,642 - +1.1 3,486,642 - +0.1 3,486,642 - -0.7 3,486,642 - +0.2 3,486,642 - -0.1 3,486,642 - +0.2 3,486,642 - -2.3 3,486,642 - -1.0 3,487,471 + +0.3 3,487,471 + -2.1 3,487,471 + -1.0 3,487,472 - +0.1 3,487,472 - -1.3 3,487,472 - -1.5 3,487,521 - -0.4 3,487,521 - -2.0 3,487,521 - -0.3 3,487,641 + AMB_RS16280 0.27 -0.3 3,487,641 + AMB_RS16280 0.27 -1.9 3,487,642 - AMB_RS16280 0.28 +0.3 3,487,642 - AMB_RS16280 0.28 -0.6 3,487,642 - AMB_RS16280 0.28 -1.0 3,487,838 + AMB_RS16280 0.61 -2.0 3,487,838 + AMB_RS16280 0.61 -2.3 3,487,838 + AMB_RS16280 0.61 +1.1 3,487,839 - AMB_RS16280 0.62 -1.3 3,487,905 + AMB_RS16280 0.73 -1.3 3,488,140 - -1.3 3,488,142 - -2.3 3,488,185 + -1.7
Or see this region's nucleotide sequence