Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14750

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14745 and AMB_RS14750 are separated by 100 nucleotidesAMB_RS14750 and AMB_RS14755 are separated by 49 nucleotides AMB_RS14745: AMB_RS14745 - ABC transporter substrate-binding protein, at 3,123,050 to 3,123,853 _RS14745 AMB_RS14750: AMB_RS14750 - PAS domain S-box protein, at 3,123,954 to 3,127,700 _RS14750 AMB_RS14755: AMB_RS14755 - PAS domain S-box protein, at 3,127,750 to 3,129,444 _RS14755 Position (kb) 3123 3124 3125 3126 3127 3128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3123.000 kb on + strandat 3123.102 kb on + strandat 3123.103 kb on - strandat 3123.242 kb on - strand, within AMB_RS14745at 3123.285 kb on + strand, within AMB_RS14745at 3123.514 kb on - strand, within AMB_RS14745at 3123.514 kb on - strand, within AMB_RS14745at 3123.516 kb on + strand, within AMB_RS14745at 3123.516 kb on + strand, within AMB_RS14745at 3123.516 kb on + strand, within AMB_RS14745at 3123.516 kb on + strand, within AMB_RS14745at 3123.516 kb on + strand, within AMB_RS14745at 3123.517 kb on - strand, within AMB_RS14745at 3123.517 kb on - strand, within AMB_RS14745at 3123.517 kb on - strand, within AMB_RS14745at 3123.517 kb on - strand, within AMB_RS14745at 3123.520 kb on + strand, within AMB_RS14745at 3123.520 kb on + strand, within AMB_RS14745at 3123.521 kb on - strand, within AMB_RS14745at 3123.531 kb on + strand, within AMB_RS14745at 3123.531 kb on + strand, within AMB_RS14745at 3123.531 kb on + strand, within AMB_RS14745at 3123.531 kb on + strand, within AMB_RS14745at 3123.532 kb on - strand, within AMB_RS14745at 3123.723 kb on + strand, within AMB_RS14745at 3123.724 kb on - strand, within AMB_RS14745at 3124.240 kb on + strandat 3124.240 kb on + strandat 3124.460 kb on + strand, within AMB_RS14750at 3124.460 kb on + strand, within AMB_RS14750at 3124.460 kb on + strand, within AMB_RS14750at 3124.461 kb on - strand, within AMB_RS14750at 3124.461 kb on - strand, within AMB_RS14750at 3124.515 kb on - strand, within AMB_RS14750at 3124.556 kb on - strand, within AMB_RS14750at 3124.670 kb on - strand, within AMB_RS14750at 3125.173 kb on + strand, within AMB_RS14750at 3125.174 kb on - strand, within AMB_RS14750at 3125.431 kb on + strand, within AMB_RS14750at 3125.431 kb on + strand, within AMB_RS14750at 3125.431 kb on + strand, within AMB_RS14750at 3125.431 kb on + strand, within AMB_RS14750at 3125.431 kb on + strand, within AMB_RS14750at 3125.431 kb on + strand, within AMB_RS14750at 3125.522 kb on + strand, within AMB_RS14750at 3125.522 kb on + strand, within AMB_RS14750at 3125.523 kb on - strand, within AMB_RS14750at 3125.714 kb on - strand, within AMB_RS14750at 3125.714 kb on - strand, within AMB_RS14750at 3125.758 kb on + strand, within AMB_RS14750at 3125.758 kb on + strand, within AMB_RS14750at 3125.758 kb on + strand, within AMB_RS14750at 3125.901 kb on + strand, within AMB_RS14750at 3125.902 kb on - strand, within AMB_RS14750at 3126.126 kb on + strand, within AMB_RS14750at 3126.127 kb on - strand, within AMB_RS14750at 3126.217 kb on + strand, within AMB_RS14750at 3126.331 kb on + strand, within AMB_RS14750at 3126.332 kb on - strand, within AMB_RS14750at 3126.332 kb on - strand, within AMB_RS14750at 3126.332 kb on - strand, within AMB_RS14750at 3126.444 kb on + strand, within AMB_RS14750at 3126.445 kb on - strand, within AMB_RS14750at 3126.445 kb on - strand, within AMB_RS14750at 3126.445 kb on - strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.835 kb on + strand, within AMB_RS14750at 3126.836 kb on - strand, within AMB_RS14750at 3126.890 kb on + strand, within AMB_RS14750at 3126.890 kb on + strand, within AMB_RS14750at 3126.890 kb on + strand, within AMB_RS14750at 3126.891 kb on - strand, within AMB_RS14750at 3126.891 kb on - strand, within AMB_RS14750at 3126.891 kb on - strand, within AMB_RS14750at 3126.945 kb on - strand, within AMB_RS14750at 3127.010 kb on - strand, within AMB_RS14750at 3127.010 kb on - strand, within AMB_RS14750at 3127.010 kb on - strand, within AMB_RS14750at 3127.503 kb on + strandat 3127.503 kb on + strandat 3127.503 kb on + strandat 3127.503 kb on + strandat 3127.503 kb on + strandat 3127.504 kb on - strandat 3127.504 kb on - strandat 3127.751 kb on + strandat 3127.751 kb on + strandat 3127.752 kb on - strandat 3127.752 kb on - strandat 3128.340 kb on + strand, within AMB_RS14755at 3128.341 kb on - strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.342 kb on + strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.343 kb on - strand, within AMB_RS14755at 3128.453 kb on + strand, within AMB_RS14755at 3128.453 kb on + strand, within AMB_RS14755at 3128.453 kb on + strand, within AMB_RS14755at 3128.453 kb on + strand, within AMB_RS14755at 3128.453 kb on + strand, within AMB_RS14755at 3128.453 kb on + strand, within AMB_RS14755at 3128.454 kb on - strand, within AMB_RS14755at 3128.471 kb on + strand, within AMB_RS14755at 3128.471 kb on + strand, within AMB_RS14755at 3128.472 kb on - strand, within AMB_RS14755at 3128.472 kb on - strand, within AMB_RS14755at 3128.472 kb on - strand, within AMB_RS14755at 3128.495 kb on + strand, within AMB_RS14755at 3128.495 kb on + strand, within AMB_RS14755at 3128.496 kb on - strand, within AMB_RS14755at 3128.518 kb on + strand, within AMB_RS14755at 3128.519 kb on - strand, within AMB_RS14755

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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3,123,000 + +0.4
3,123,102 + -1.0
3,123,103 - -1.0
3,123,242 - AMB_RS14745 0.24 -2.8
3,123,285 + AMB_RS14745 0.29 +1.3
3,123,514 - AMB_RS14745 0.58 -0.1
3,123,514 - AMB_RS14745 0.58 -3.4
3,123,516 + AMB_RS14745 0.58 +0.3
3,123,516 + AMB_RS14745 0.58 -0.3
3,123,516 + AMB_RS14745 0.58 -1.3
3,123,516 + AMB_RS14745 0.58 -3.0
3,123,516 + AMB_RS14745 0.58 -0.1
3,123,517 - AMB_RS14745 0.58 +0.3
3,123,517 - AMB_RS14745 0.58 -1.3
3,123,517 - AMB_RS14745 0.58 +0.7
3,123,517 - AMB_RS14745 0.58 -0.2
3,123,520 + AMB_RS14745 0.58 -0.7
3,123,520 + AMB_RS14745 0.58 +1.0
3,123,521 - AMB_RS14745 0.59 -3.4
3,123,531 + AMB_RS14745 0.60 -1.0
3,123,531 + AMB_RS14745 0.60 +0.1
3,123,531 + AMB_RS14745 0.60 +0.3
3,123,531 + AMB_RS14745 0.60 -1.0
3,123,532 - AMB_RS14745 0.60 -0.1
3,123,723 + AMB_RS14745 0.84 +0.3
3,123,724 - AMB_RS14745 0.84 -0.2
3,124,240 + -0.4
3,124,240 + -2.3
3,124,460 + AMB_RS14750 0.14 +0.3
3,124,460 + AMB_RS14750 0.14 -1.3
3,124,460 + AMB_RS14750 0.14 -0.2
3,124,461 - AMB_RS14750 0.14 +0.2
3,124,461 - AMB_RS14750 0.14 +0.3
3,124,515 - AMB_RS14750 0.15 +0.2
3,124,556 - AMB_RS14750 0.16 -0.2
3,124,670 - AMB_RS14750 0.19 +0.1
3,125,173 + AMB_RS14750 0.33 -1.3
3,125,174 - AMB_RS14750 0.33 -1.5
3,125,431 + AMB_RS14750 0.39 -0.8
3,125,431 + AMB_RS14750 0.39 -0.3
3,125,431 + AMB_RS14750 0.39 -1.0
3,125,431 + AMB_RS14750 0.39 -0.3
3,125,431 + AMB_RS14750 0.39 -0.1
3,125,431 + AMB_RS14750 0.39 +0.1
3,125,522 + AMB_RS14750 0.42 +0.1
3,125,522 + AMB_RS14750 0.42 -1.0
3,125,523 - AMB_RS14750 0.42 -1.3
3,125,714 - AMB_RS14750 0.47 -1.0
3,125,714 - AMB_RS14750 0.47 +0.3
3,125,758 + AMB_RS14750 0.48 +0.3
3,125,758 + AMB_RS14750 0.48 +0.1
3,125,758 + AMB_RS14750 0.48 -2.4
3,125,901 + AMB_RS14750 0.52 -0.1
3,125,902 - AMB_RS14750 0.52 +0.0
3,126,126 + AMB_RS14750 0.58 -1.9
3,126,127 - AMB_RS14750 0.58 +0.4
3,126,217 + AMB_RS14750 0.60 -1.5
3,126,331 + AMB_RS14750 0.63 -0.3
3,126,332 - AMB_RS14750 0.63 +0.1
3,126,332 - AMB_RS14750 0.63 +0.2
3,126,332 - AMB_RS14750 0.63 +0.3
3,126,444 + AMB_RS14750 0.66 +1.3
3,126,445 - AMB_RS14750 0.66 +0.3
3,126,445 - AMB_RS14750 0.66 -2.7
3,126,445 - AMB_RS14750 0.66 +0.4
3,126,835 + AMB_RS14750 0.77 +0.2
3,126,835 + AMB_RS14750 0.77 +0.1
3,126,835 + AMB_RS14750 0.77 -0.4
3,126,835 + AMB_RS14750 0.77 -0.7
3,126,835 + AMB_RS14750 0.77 -0.7
3,126,835 + AMB_RS14750 0.77 -0.6
3,126,835 + AMB_RS14750 0.77 -2.2
3,126,835 + AMB_RS14750 0.77 -0.2
3,126,835 + AMB_RS14750 0.77 +0.1
3,126,836 - AMB_RS14750 0.77 +0.2
3,126,890 + AMB_RS14750 0.78 -0.3
3,126,890 + AMB_RS14750 0.78 -4.5
3,126,890 + AMB_RS14750 0.78 +0.4
3,126,891 - AMB_RS14750 0.78 +1.3
3,126,891 - AMB_RS14750 0.78 +0.6
3,126,891 - AMB_RS14750 0.78 -1.9
3,126,945 - AMB_RS14750 0.80 -2.0
3,127,010 - AMB_RS14750 0.82 +0.4
3,127,010 - AMB_RS14750 0.82 +0.5
3,127,010 - AMB_RS14750 0.82 -0.3
3,127,503 + -1.4
3,127,503 + -1.5
3,127,503 + -0.1
3,127,503 + +0.3
3,127,503 + +1.2
3,127,504 - +0.2
3,127,504 - +0.5
3,127,751 + -0.5
3,127,751 + +0.3
3,127,752 - -0.7
3,127,752 - +0.1
3,128,340 + AMB_RS14755 0.35 +0.7
3,128,341 - AMB_RS14755 0.35 -0.3
3,128,342 + AMB_RS14755 0.35 -0.2
3,128,342 + AMB_RS14755 0.35 -0.7
3,128,342 + AMB_RS14755 0.35 -2.4
3,128,342 + AMB_RS14755 0.35 -0.1
3,128,342 + AMB_RS14755 0.35 +0.1
3,128,342 + AMB_RS14755 0.35 -0.2
3,128,342 + AMB_RS14755 0.35 -0.7
3,128,342 + AMB_RS14755 0.35 -1.4
3,128,342 + AMB_RS14755 0.35 -1.7
3,128,342 + AMB_RS14755 0.35 +0.4
3,128,343 - AMB_RS14755 0.35 +0.2
3,128,343 - AMB_RS14755 0.35 -2.0
3,128,343 - AMB_RS14755 0.35 -0.7
3,128,343 - AMB_RS14755 0.35 +0.4
3,128,343 - AMB_RS14755 0.35 -1.3
3,128,343 - AMB_RS14755 0.35 -0.3
3,128,343 - AMB_RS14755 0.35 +0.0
3,128,343 - AMB_RS14755 0.35 -0.4
3,128,453 + AMB_RS14755 0.41 +0.3
3,128,453 + AMB_RS14755 0.41 -2.0
3,128,453 + AMB_RS14755 0.41 +0.1
3,128,453 + AMB_RS14755 0.41 -0.7
3,128,453 + AMB_RS14755 0.41 +0.7
3,128,453 + AMB_RS14755 0.41 +0.2
3,128,454 - AMB_RS14755 0.42 -1.7
3,128,471 + AMB_RS14755 0.43 +0.3
3,128,471 + AMB_RS14755 0.43 -3.4
3,128,472 - AMB_RS14755 0.43 -0.1
3,128,472 - AMB_RS14755 0.43 -0.3
3,128,472 - AMB_RS14755 0.43 +0.1
3,128,495 + AMB_RS14755 0.44 -1.7
3,128,495 + AMB_RS14755 0.44 +0.0
3,128,496 - AMB_RS14755 0.44 +0.3
3,128,518 + AMB_RS14755 0.45 +0.3
3,128,519 - AMB_RS14755 0.45 -0.1

Or see this region's nucleotide sequence