Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14270

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14265 and AMB_RS14270 are separated by 183 nucleotidesAMB_RS14270 and AMB_RS14275 are separated by 46 nucleotides AMB_RS14265: AMB_RS14265 - aspartate--tRNA ligase, at 3,031,963 to 3,033,759 _RS14265 AMB_RS14270: AMB_RS14270 - response regulator, at 3,033,943 to 3,034,545 _RS14270 AMB_RS14275: AMB_RS14275 - ribonuclease D, at 3,034,592 to 3,035,785 _RS14275 Position (kb) 3033 3034 3035Strain fitness (log2 ratio) -2 -1 0 1at 3033.841 kb on - strandat 3033.845 kb on - strandat 3033.937 kb on + strandat 3033.937 kb on + strandat 3033.938 kb on - strandat 3033.938 kb on - strandat 3033.938 kb on - strandat 3034.006 kb on - strand, within AMB_RS14270at 3034.360 kb on + strand, within AMB_RS14270at 3034.360 kb on + strand, within AMB_RS14270at 3034.455 kb on - strand, within AMB_RS14270at 3034.496 kb on + strandat 3034.496 kb on + strandat 3034.578 kb on + strandat 3034.578 kb on + strandat 3034.578 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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3,033,841 - +0.0
3,033,845 - -0.7
3,033,937 + +0.3
3,033,937 + +0.3
3,033,938 - +0.1
3,033,938 - -2.3
3,033,938 - +0.3
3,034,006 - AMB_RS14270 0.10 -0.0
3,034,360 + AMB_RS14270 0.69 +0.3
3,034,360 + AMB_RS14270 0.69 -0.3
3,034,455 - AMB_RS14270 0.85 -1.3
3,034,496 + +0.2
3,034,496 + +0.5
3,034,578 + -0.1
3,034,578 + +1.3
3,034,578 + -0.1

Or see this region's nucleotide sequence