Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11820

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11815 and AMB_RS11820 are separated by 69 nucleotidesAMB_RS11820 and AMB_RS11825 are separated by 31 nucleotides AMB_RS11815: AMB_RS11815 - serine hydroxymethyltransferase, at 2,545,611 to 2,546,894 _RS11815 AMB_RS11820: AMB_RS11820 - transcriptional regulator NrdR, at 2,546,964 to 2,547,425 _RS11820 AMB_RS11825: AMB_RS11825 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 2,547,457 to 2,548,533 _RS11825 Position (kb) 2546 2547 2548Strain fitness (log2 ratio) -2 -1 0 1at 2546.886 kb on + strandat 2546.887 kb on - strandat 2546.887 kb on - strandat 2546.892 kb on + strandat 2546.893 kb on - strandat 2547.026 kb on + strand, within AMB_RS11820at 2547.185 kb on - strand, within AMB_RS11820at 2547.333 kb on + strand, within AMB_RS11820at 2547.333 kb on + strand, within AMB_RS11820

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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2,546,886 + -0.0
2,546,887 - -1.5
2,546,887 - -1.1
2,546,892 + +1.2
2,546,893 - -1.1
2,547,026 + AMB_RS11820 0.13 +1.2
2,547,185 - AMB_RS11820 0.48 -1.8
2,547,333 + AMB_RS11820 0.80 -0.4
2,547,333 + AMB_RS11820 0.80 -0.2

Or see this region's nucleotide sequence