Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10960

Experiment: 30_an_mag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_mag_3
2,351,777	+		AMB_RS10950	0.59	+0.1
2,351,777	+		AMB_RS10950	0.59	-1.7
2,351,778	-		AMB_RS10950	0.59	+0.2
2,351,866	-		AMB_RS10950	0.70	-0.2
2,351,962	-		AMB_RS10950	0.82	-0.1
2,351,996	+		AMB_RS10950	0.86	+1.9
2,351,996	+		AMB_RS10950	0.86	-0.4
2,351,997	-		AMB_RS10950	0.86	-0.0
2,352,154	+				+0.5
2,352,154	+				-1.4
2,352,154	+				-0.0
2,352,154	+				+0.0
2,352,155	-				-1.4
2,352,155	-				+0.2
2,352,155	-				-0.1
2,352,298	+		AMB_RS10955	0.34	-2.2
2,352,298	+		AMB_RS10955	0.34	+0.0
2,352,298	+		AMB_RS10955	0.34	-1.0
2,352,298	+		AMB_RS10955	0.34	-0.2
2,352,298	+		AMB_RS10955	0.34	+0.0
2,352,298	+		AMB_RS10955	0.34	+1.1
2,352,298	+		AMB_RS10955	0.34	-2.3
2,352,298	+		AMB_RS10955	0.34	-0.1
2,352,299	-		AMB_RS10955	0.35	-0.4
2,352,299	-		AMB_RS10955	0.35	+0.1
2,352,299	-		AMB_RS10955	0.35	+0.4
2,352,299	-		AMB_RS10955	0.35	+0.2
2,352,390	-		AMB_RS10955	0.51	-0.4
2,352,566	-		AMB_RS10955	0.83	-0.0
2,352,566	-		AMB_RS10955	0.83	-0.3
2,352,615	+				+0.3
2,352,615	+				+0.3
2,352,615	+				-0.1
2,352,616	-				+0.7
2,352,666	+				+0.2
2,352,666	+				+0.2
2,352,799	+				-1.4
2,352,799	+				+0.8
2,352,799	+				-1.2
2,352,800	-				-2.0
2,352,800	-				-2.2
2,352,845	-		AMB_RS10960	0.11	-0.9
2,352,846	+		AMB_RS10960	0.11	-0.1
2,352,846	+		AMB_RS10960	0.11	-1.2
2,352,847	-		AMB_RS10960	0.11	-0.1
2,352,847	-		AMB_RS10960	0.11	-1.4
2,352,847	-		AMB_RS10960	0.11	+0.3
2,352,847	-		AMB_RS10960	0.11	+0.1
2,352,847	-		AMB_RS10960	0.11	-2.9
2,352,847	-		AMB_RS10960	0.11	-0.1
2,352,895	-		AMB_RS10960	0.14	-0.0
2,352,956	-		AMB_RS10960	0.18	-0.4
2,353,008	+		AMB_RS10960	0.21	-2.3
2,353,038	+		AMB_RS10960	0.23	+0.1
2,353,039	-		AMB_RS10960	0.23	-3.1
2,353,042	-		AMB_RS10960	0.24	-0.1
2,353,042	-		AMB_RS10960	0.24	-1.9
2,353,086	+		AMB_RS10960	0.26	-1.2
2,353,087	-		AMB_RS10960	0.26	-2.8
2,353,087	-		AMB_RS10960	0.26	-0.2
2,353,087	-		AMB_RS10960	0.26	-0.3
2,353,107	+		AMB_RS10960	0.28	-0.5
2,353,107	+		AMB_RS10960	0.28	+0.2
2,353,107	+		AMB_RS10960	0.28	+0.1
2,353,107	+		AMB_RS10960	0.28	+0.1
2,353,107	+		AMB_RS10960	0.28	-1.4
2,353,107	+		AMB_RS10960	0.28	+0.2
2,353,108	-		AMB_RS10960	0.28	-0.4
2,353,108	-		AMB_RS10960	0.28	-0.1
2,353,108	-		AMB_RS10960	0.28	+0.2
2,353,108	-		AMB_RS10960	0.28	-0.5
2,353,108	-		AMB_RS10960	0.28	+0.1
2,353,110	+		AMB_RS10960	0.28	+0.2
2,353,110	+		AMB_RS10960	0.28	+1.1
2,353,110	+		AMB_RS10960	0.28	-0.1
2,353,110	+		AMB_RS10960	0.28	-0.3
2,353,110	+		AMB_RS10960	0.28	+0.7
2,353,111	-		AMB_RS10960	0.28	-2.0
2,353,111	-		AMB_RS10960	0.28	+0.3
2,353,111	-		AMB_RS10960	0.28	-0.3
2,353,111	-		AMB_RS10960	0.28	+0.9
2,353,111	-		AMB_RS10960	0.28	-0.2
2,353,111	-		AMB_RS10960	0.28	+0.2
2,353,311	+		AMB_RS10960	0.40	+1.1
2,353,312	-		AMB_RS10960	0.40	-0.9
2,353,348	+		AMB_RS10960	0.43	+0.3
2,353,348	+		AMB_RS10960	0.43	-0.1
2,353,348	+		AMB_RS10960	0.43	-0.2
2,353,348	+		AMB_RS10960	0.43	-1.4
2,353,348	+		AMB_RS10960	0.43	+0.6
2,353,349	-		AMB_RS10960	0.43	+0.3
2,353,349	-		AMB_RS10960	0.43	-0.3
2,353,349	-		AMB_RS10960	0.43	-1.2
2,353,349	-		AMB_RS10960	0.43	-2.2
2,353,349	-		AMB_RS10960	0.43	-0.1
2,353,349	-		AMB_RS10960	0.43	+0.5
2,353,349	-		AMB_RS10960	0.43	+0.7
2,353,349	-		AMB_RS10960	0.43	+0.0
2,353,349	-		AMB_RS10960	0.43	-2.4
2,353,349	-		AMB_RS10960	0.43	-1.7
2,353,349	-		AMB_RS10960	0.43	-0.5
2,353,398	+		AMB_RS10960	0.46	-0.4
2,353,398	+		AMB_RS10960	0.46	+0.2
2,353,399	-		AMB_RS10960	0.46	-0.9
2,353,399	-		AMB_RS10960	0.46	+0.1
2,353,399	-		AMB_RS10960	0.46	-1.9
2,353,399	-		AMB_RS10960	0.46	-1.2
2,353,488	+		AMB_RS10960	0.51	-1.2
2,353,489	-		AMB_RS10960	0.52	-2.4
2,353,489	-		AMB_RS10960	0.52	+0.3
2,353,489	-		AMB_RS10960	0.52	-0.1
2,353,489	-		AMB_RS10960	0.52	+0.3
2,353,527	+		AMB_RS10960	0.54	+0.1
2,353,528	-		AMB_RS10960	0.54	+1.1
2,353,528	-		AMB_RS10960	0.54	-0.0
2,353,528	-		AMB_RS10960	0.54	-1.0
2,353,830	+		AMB_RS10960	0.73	-0.2
2,353,831	-		AMB_RS10960	0.73	-1.6
2,353,831	-		AMB_RS10960	0.73	-1.7
2,354,055	+		AMB_RS10960	0.87	+0.5
2,354,055	+		AMB_RS10960	0.87	-0.4
2,354,055	+		AMB_RS10960	0.87	+0.6
2,354,055	+		AMB_RS10960	0.87	-0.9
2,354,055	+		AMB_RS10960	0.87	-0.1
2,354,055	+		AMB_RS10960	0.87	-0.8
2,354,055	+		AMB_RS10960	0.87	-0.2
2,354,056	-		AMB_RS10960	0.87	+0.1
2,354,056	-		AMB_RS10960	0.87	+0.6
2,354,056	-		AMB_RS10960	0.87	+0.6
2,354,056	-		AMB_RS10960	0.87	+0.7
2,354,056	-		AMB_RS10960	0.87	-0.1
2,354,056	-		AMB_RS10960	0.87	-2.2
2,354,056	-		AMB_RS10960	0.87	-0.5
2,354,056	-		AMB_RS10960	0.87	-0.5
2,354,056	-		AMB_RS10960	0.87	-0.4
2,354,056	-		AMB_RS10960	0.87	+0.7
2,354,056	-		AMB_RS10960	0.87	-0.3
2,354,166	+				-1.2
2,354,166	+				+1.1
2,354,167	-				+0.2
2,354,167	-				-0.7
2,354,199	+				+0.1
2,354,330	+				-2.4
2,354,330	+				-0.4
2,354,330	+				+1.1
2,354,330	+				-1.2
2,354,330	+				-1.0
2,354,330	+				-2.9
2,354,331	-				-0.4
2,354,331	-				-2.7
2,354,331	-				+0.0
2,354,331	-				-1.5
2,354,331	-				-1.4
2,354,331	-				-2.7
2,354,442	-		AMB_RS10965	0.21	-1.7
2,354,444	+		AMB_RS10965	0.21	+0.3
2,354,444	+		AMB_RS10965	0.21	+0.6
2,354,444	+		AMB_RS10965	0.21	-0.9
2,354,444	+		AMB_RS10965	0.21	+1.1
2,354,444	+		AMB_RS10965	0.21	-0.2
2,354,444	+		AMB_RS10965	0.21	+0.1
2,354,445	-		AMB_RS10965	0.21	-0.3
2,354,635	+		AMB_RS10965	0.43	-0.6
2,354,635	+		AMB_RS10965	0.43	+0.2
2,354,636	-		AMB_RS10965	0.43	+0.3
2,354,636	-		AMB_RS10965	0.43	-0.4
2,354,636	-		AMB_RS10965	0.43	+0.9
2,354,688	-		AMB_RS10965	0.49	+0.1
2,354,693	+		AMB_RS10965	0.49	-1.2
2,354,694	-		AMB_RS10965	0.49	+0.2
2,354,694	-		AMB_RS10965	0.49	-0.9
2,354,702	+		AMB_RS10965	0.50	+0.1
2,354,703	-		AMB_RS10965	0.50	-0.4
2,354,703	-		AMB_RS10965	0.50	-0.5
2,354,762	+		AMB_RS10965	0.57	-0.4
2,354,762	+		AMB_RS10965	0.57	-0.2
2,354,762	+		AMB_RS10965	0.57	-1.0
2,354,763	-		AMB_RS10965	0.57	-0.5
2,354,763	-		AMB_RS10965	0.57	-0.7
2,354,782	+		AMB_RS10965	0.59	-0.1
2,354,782	+		AMB_RS10965	0.59	+1.1
2,354,900	+		AMB_RS10965	0.73	-0.6
2,354,900	+		AMB_RS10965	0.73	-0.2
2,354,901	-		AMB_RS10965	0.73	-0.2
2,354,917	+		AMB_RS10965	0.74	-2.6
2,355,061	+				-1.9
2,355,061	+				-2.6
2,355,062	-				-0.3
2,355,163	+				+0.5
2,355,163	+				-0.3
2,355,164	-				-2.7
2,355,164	-				-0.2
2,355,164	-				-0.4
2,355,254	+				-0.4