Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04590 and AMB_RS04595 are separated by 218 nucleotides AMB_RS04595 and AMB_RS04600 are separated by 266 nucleotides
AMB_RS04590: AMB_RS04590 - hypothetical protein, at 960,304 to 961,458
_RS04590
AMB_RS04595: AMB_RS04595 - peptidase, at 961,677 to 962,414
_RS04595
AMB_RS04600: AMB_RS04600 - membrane protein, at 962,681 to 964,069
_RS04600
Position (kb) 961
962
963 Strain fitness (log2 ratio) -2
-1
0
1 at 960.856 kb on - strand, within AMB_RS04590 at 960.910 kb on + strand, within AMB_RS04590 at 960.911 kb on - strand, within AMB_RS04590 at 960.911 kb on - strand, within AMB_RS04590 at 961.229 kb on + strand, within AMB_RS04590 at 961.229 kb on + strand, within AMB_RS04590 at 961.229 kb on + strand, within AMB_RS04590 at 961.229 kb on + strand, within AMB_RS04590 at 961.229 kb on + strand, within AMB_RS04590 at 961.229 kb on + strand, within AMB_RS04590 at 961.230 kb on - strand, within AMB_RS04590 at 961.230 kb on - strand, within AMB_RS04590 at 961.230 kb on - strand, within AMB_RS04590 at 961.230 kb on - strand, within AMB_RS04590 at 961.519 kb on + strand at 961.519 kb on + strand at 961.519 kb on + strand at 961.519 kb on + strand at 961.520 kb on - strand at 961.520 kb on - strand at 961.520 kb on - strand at 961.520 kb on - strand at 961.529 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.684 kb on - strand at 961.684 kb on - strand at 961.684 kb on - strand at 961.779 kb on + strand, within AMB_RS04595 at 961.779 kb on + strand, within AMB_RS04595 at 961.780 kb on - strand, within AMB_RS04595 at 961.780 kb on - strand, within AMB_RS04595 at 961.906 kb on - strand, within AMB_RS04595 at 961.906 kb on - strand, within AMB_RS04595 at 961.923 kb on + strand, within AMB_RS04595 at 961.923 kb on + strand, within AMB_RS04595 at 961.923 kb on + strand, within AMB_RS04595 at 961.924 kb on - strand, within AMB_RS04595 at 961.924 kb on - strand, within AMB_RS04595 at 961.924 kb on - strand, within AMB_RS04595 at 962.070 kb on + strand, within AMB_RS04595 at 962.071 kb on - strand, within AMB_RS04595 at 962.071 kb on - strand, within AMB_RS04595 at 962.136 kb on + strand, within AMB_RS04595 at 962.137 kb on - strand, within AMB_RS04595 at 962.329 kb on - strand, within AMB_RS04595 at 962.454 kb on + strand at 962.454 kb on + strand at 962.455 kb on - strand at 962.455 kb on - strand at 962.455 kb on - strand at 962.455 kb on - strand at 962.483 kb on + strand at 962.484 kb on - strand at 962.484 kb on - strand at 962.484 kb on - strand at 962.569 kb on + strand at 962.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 960,856 - AMB_RS04590 0.48 -2.1 960,910 + AMB_RS04590 0.52 -0.0 960,911 - AMB_RS04590 0.53 -0.6 960,911 - AMB_RS04590 0.53 +0.2 961,229 + AMB_RS04590 0.80 -0.7 961,229 + AMB_RS04590 0.80 -0.3 961,229 + AMB_RS04590 0.80 -0.6 961,229 + AMB_RS04590 0.80 -2.5 961,229 + AMB_RS04590 0.80 -1.2 961,229 + AMB_RS04590 0.80 -2.6 961,230 - AMB_RS04590 0.80 -1.6 961,230 - AMB_RS04590 0.80 -0.1 961,230 - AMB_RS04590 0.80 +0.7 961,230 - AMB_RS04590 0.80 -0.7 961,519 + +0.2 961,519 + -0.3 961,519 + +0.0 961,519 + +0.5 961,520 - -1.4 961,520 - +1.2 961,520 - -0.5 961,520 - +0.2 961,529 + +1.1 961,683 + -1.2 961,683 + -0.3 961,683 + -0.4 961,683 + +1.0 961,683 + +0.1 961,683 + +0.0 961,683 + -1.6 961,684 - +0.5 961,684 - -0.3 961,684 - +0.8 961,779 + AMB_RS04595 0.14 +0.4 961,779 + AMB_RS04595 0.14 -1.9 961,780 - AMB_RS04595 0.14 +0.4 961,780 - AMB_RS04595 0.14 +0.1 961,906 - AMB_RS04595 0.31 -1.4 961,906 - AMB_RS04595 0.31 -0.2 961,923 + AMB_RS04595 0.33 -1.8 961,923 + AMB_RS04595 0.33 -1.6 961,923 + AMB_RS04595 0.33 +0.7 961,924 - AMB_RS04595 0.33 -0.1 961,924 - AMB_RS04595 0.33 -1.6 961,924 - AMB_RS04595 0.33 -1.4 962,070 + AMB_RS04595 0.53 +0.1 962,071 - AMB_RS04595 0.53 +0.3 962,071 - AMB_RS04595 0.53 +0.4 962,136 + AMB_RS04595 0.62 +0.7 962,137 - AMB_RS04595 0.62 -0.0 962,329 - AMB_RS04595 0.88 -2.1 962,454 + -1.2 962,454 + +0.4 962,455 - -0.6 962,455 - +0.1 962,455 - -1.2 962,455 - -1.2 962,483 + +0.2 962,484 - +0.5 962,484 - +1.4 962,484 - -2.2 962,569 + -0.3 962,595 - -0.4
Or see this region's nucleotide sequence