Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04255

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04250 and AMB_RS04255 are separated by 9 nucleotidesAMB_RS04255 and AMB_RS04260 are separated by 4 nucleotidesAMB_RS04260 and AMB_RS04265 are separated by 4 nucleotides AMB_RS04250: AMB_RS04250 - bifunctional riboflavin kinase/FAD synthetase, at 891,565 to 892,554 _RS04250 AMB_RS04255: AMB_RS04255 - isoleucine--tRNA ligase, at 892,564 to 895,409 _RS04255 AMB_RS04260: AMB_RS04260 - signal peptidase II, at 895,414 to 895,932 _RS04260 AMB_RS04265: AMB_RS04265 - DUF3035 domain-containing protein, at 895,937 to 896,524 _RS04265 Position (kb) 892 893 894 895 896Strain fitness (log2 ratio) -2 -1 0 1at 895.923 kb on + strandat 895.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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895,923 + -2.1
895,930 + -1.8

Or see this region's nucleotide sequence