Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04025

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04015 and AMB_RS04020 are separated by 102 nucleotidesAMB_RS04020 and AMB_RS04025 are separated by 120 nucleotidesAMB_RS04025 and AMB_RS04030 are separated by 2 nucleotidesAMB_RS04030 and AMB_RS04035 overlap by 4 nucleotidesAMB_RS04035 and AMB_RS04040 are separated by 1 nucleotides AMB_RS04015: AMB_RS04015 - phosphoenolpyruvate carboxykinase (GTP), at 841,033 to 842,886 _RS04015 AMB_RS04020: AMB_RS04020 - hypothetical protein, at 842,989 to 843,423 _RS04020 AMB_RS04025: AMB_RS04025 - glutathione S-transferase, at 843,544 to 844,149 _RS04025 AMB_RS04030: AMB_RS04030 - cupin, at 844,152 to 844,577 _RS04030 AMB_RS04035: AMB_RS04035 - hypothetical protein, at 844,574 to 845,050 _RS04035 AMB_RS04040: AMB_RS04040 - phosphatase, at 845,052 to 845,717 _RS04040 Position (kb) 843 844 845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 842.952 kb on + strandat 842.952 kb on + strandat 842.953 kb on - strandat 842.953 kb on - strandat 842.953 kb on - strandat 842.953 kb on - strandat 842.953 kb on - strandat 842.958 kb on + strandat 842.991 kb on - strandat 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.418 kb on + strandat 843.419 kb on - strandat 843.419 kb on - strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.556 kb on + strandat 843.557 kb on - strandat 843.575 kb on - strandat 843.575 kb on - strandat 843.755 kb on - strand, within AMB_RS04025at 844.033 kb on + strand, within AMB_RS04025at 844.033 kb on + strand, within AMB_RS04025at 844.033 kb on + strand, within AMB_RS04025at 844.034 kb on - strand, within AMB_RS04025at 844.034 kb on - strand, within AMB_RS04025at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.278 kb on + strand, within AMB_RS04030at 844.278 kb on + strand, within AMB_RS04030at 844.279 kb on - strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.341 kb on + strand, within AMB_RS04030at 844.341 kb on + strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.980 kb on - strand, within AMB_RS04035at 845.124 kb on + strand, within AMB_RS04040at 845.125 kb on - strand, within AMB_RS04040

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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842,952 + -0.6
842,952 + -1.9
842,953 - +0.7
842,953 - +1.0
842,953 - +0.1
842,953 - +0.2
842,953 - -1.2
842,958 + -1.2
842,991 - -1.4
843,215 + AMB_RS04020 0.52 -0.2
843,215 + AMB_RS04020 0.52 -0.3
843,215 + AMB_RS04020 0.52 -1.3
843,215 + AMB_RS04020 0.52 +0.0
843,215 + AMB_RS04020 0.52 -1.2
843,215 + AMB_RS04020 0.52 -1.4
843,215 + AMB_RS04020 0.52 -1.9
843,215 + AMB_RS04020 0.52 -0.9
843,216 - AMB_RS04020 0.52 -2.9
843,216 - AMB_RS04020 0.52 +0.1
843,216 - AMB_RS04020 0.52 +0.3
843,216 - AMB_RS04020 0.52 -0.7
843,216 - AMB_RS04020 0.52 -1.2
843,216 - AMB_RS04020 0.52 +1.4
843,216 - AMB_RS04020 0.52 -0.9
843,216 - AMB_RS04020 0.52 -0.6
843,418 + +0.5
843,419 - +0.2
843,419 - -0.3
843,465 + -0.1
843,465 + -0.4
843,465 + -0.7
843,465 + +0.6
843,465 + +0.0
843,465 + +0.4
843,465 + -2.5
843,465 + -0.9
843,466 - -0.3
843,466 - +0.5
843,466 - -0.0
843,466 - +0.0
843,466 - -3.9
843,556 + -0.1
843,557 - +0.1
843,575 - -0.1
843,575 - -1.8
843,755 - AMB_RS04025 0.35 +0.0
844,033 + AMB_RS04025 0.81 -0.2
844,033 + AMB_RS04025 0.81 -2.9
844,033 + AMB_RS04025 0.81 -0.3
844,034 - AMB_RS04025 0.81 -0.9
844,034 - AMB_RS04025 0.81 -2.9
844,275 + AMB_RS04030 0.29 +0.3
844,275 + AMB_RS04030 0.29 -1.6
844,275 + AMB_RS04030 0.29 +0.2
844,275 + AMB_RS04030 0.29 -0.0
844,275 + AMB_RS04030 0.29 +0.7
844,275 + AMB_RS04030 0.29 +0.3
844,275 + AMB_RS04030 0.29 +0.4
844,276 - AMB_RS04030 0.29 -2.6
844,276 - AMB_RS04030 0.29 +0.4
844,276 - AMB_RS04030 0.29 -0.3
844,276 - AMB_RS04030 0.29 -0.2
844,276 - AMB_RS04030 0.29 +1.4
844,276 - AMB_RS04030 0.29 +0.5
844,276 - AMB_RS04030 0.29 +0.6
844,278 + AMB_RS04030 0.30 +0.2
844,278 + AMB_RS04030 0.30 -1.8
844,279 - AMB_RS04030 0.30 -2.4
844,333 + AMB_RS04030 0.42 -0.1
844,333 + AMB_RS04030 0.42 -0.6
844,333 + AMB_RS04030 0.42 +0.5
844,333 + AMB_RS04030 0.42 +0.3
844,341 + AMB_RS04030 0.44 -0.6
844,341 + AMB_RS04030 0.44 +0.1
844,342 - AMB_RS04030 0.45 -0.6
844,342 - AMB_RS04030 0.45 +1.1
844,342 - AMB_RS04030 0.45 -2.1
844,342 - AMB_RS04030 0.45 -1.8
844,979 + AMB_RS04035 0.85 +0.9
844,979 + AMB_RS04035 0.85 +0.8
844,979 + AMB_RS04035 0.85 +0.0
844,980 - AMB_RS04035 0.85 +0.0
845,124 + AMB_RS04040 0.11 -2.4
845,125 - AMB_RS04040 0.11 +0.2

Or see this region's nucleotide sequence