Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03955 and AMB_RS03960 are separated by 123 nucleotides AMB_RS03960 and AMB_RS03965 overlap by 4 nucleotides AMB_RS03965 and AMB_RS03970 overlap by 4 nucleotides
AMB_RS03955: AMB_RS03955 - methyltransferase, at 829,825 to 830,490
_RS03955
AMB_RS03960: AMB_RS03960 - ABC transporter permease, at 830,614 to 831,414
_RS03960
AMB_RS03965: AMB_RS03965 - ABC transporter ATP-binding protein, at 831,411 to 832,154
_RS03965
AMB_RS03970: AMB_RS03970 - hypothetical protein, at 832,151 to 833,413
_RS03970
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1 at 830.416 kb on + strand, within AMB_RS03955 at 830.417 kb on - strand, within AMB_RS03955 at 830.417 kb on - strand, within AMB_RS03955 at 830.417 kb on - strand, within AMB_RS03955 at 830.418 kb on + strand, within AMB_RS03955 at 830.418 kb on + strand, within AMB_RS03955 at 830.418 kb on + strand, within AMB_RS03955 at 830.419 kb on - strand, within AMB_RS03955 at 830.419 kb on - strand, within AMB_RS03955 at 830.419 kb on - strand, within AMB_RS03955 at 830.420 kb on - strand, within AMB_RS03955 at 830.473 kb on + strand at 830.473 kb on + strand at 830.474 kb on - strand at 830.504 kb on + strand at 830.552 kb on + strand at 830.552 kb on + strand at 830.553 kb on - strand at 830.553 kb on - strand at 830.558 kb on + strand at 830.558 kb on + strand at 830.558 kb on + strand at 830.559 kb on - strand at 830.559 kb on - strand at 830.559 kb on - strand at 830.696 kb on + strand, within AMB_RS03960 at 830.844 kb on - strand, within AMB_RS03960 at 830.844 kb on - strand, within AMB_RS03960 at 830.846 kb on + strand, within AMB_RS03960 at 830.846 kb on + strand, within AMB_RS03960 at 830.846 kb on + strand, within AMB_RS03960 at 830.846 kb on + strand, within AMB_RS03960 at 830.846 kb on + strand, within AMB_RS03960 at 830.846 kb on + strand, within AMB_RS03960 at 830.846 kb on + strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 830.847 kb on - strand, within AMB_RS03960 at 831.014 kb on + strand, within AMB_RS03960 at 831.014 kb on + strand, within AMB_RS03960 at 831.014 kb on + strand, within AMB_RS03960 at 831.015 kb on - strand, within AMB_RS03960 at 831.020 kb on + strand, within AMB_RS03960 at 831.021 kb on - strand, within AMB_RS03960 at 831.021 kb on - strand, within AMB_RS03960 at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.634 kb on + strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.857 kb on - strand, within AMB_RS03965 at 831.857 kb on - strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 832.425 kb on + strand, within AMB_RS03970 at 832.426 kb on - strand, within AMB_RS03970 at 832.426 kb on - strand, within AMB_RS03970 at 832.488 kb on + strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.044 kb on - strand, within AMB_RS03970 at 833.044 kb on - strand, within AMB_RS03970
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 830,416 + AMB_RS03955 0.89 +0.5 830,417 - AMB_RS03955 0.89 -1.8 830,417 - AMB_RS03955 0.89 +0.3 830,417 - AMB_RS03955 0.89 +0.4 830,418 + AMB_RS03955 0.89 -0.2 830,418 + AMB_RS03955 0.89 -1.2 830,418 + AMB_RS03955 0.89 -2.3 830,419 - AMB_RS03955 0.89 -0.0 830,419 - AMB_RS03955 0.89 -1.6 830,419 - AMB_RS03955 0.89 +0.1 830,420 - AMB_RS03955 0.89 -1.0 830,473 + -0.4 830,473 + -1.8 830,474 - +0.4 830,504 + -0.0 830,552 + +0.0 830,552 + -0.0 830,553 - -2.3 830,553 - -0.6 830,558 + -0.6 830,558 + -0.2 830,558 + +0.1 830,559 - -0.1 830,559 - +0.5 830,559 - +0.6 830,696 + AMB_RS03960 0.10 -0.6 830,844 - AMB_RS03960 0.29 +0.4 830,844 - AMB_RS03960 0.29 -1.0 830,846 + AMB_RS03960 0.29 +0.4 830,846 + AMB_RS03960 0.29 -0.2 830,846 + AMB_RS03960 0.29 +0.5 830,846 + AMB_RS03960 0.29 -1.4 830,846 + AMB_RS03960 0.29 +0.4 830,846 + AMB_RS03960 0.29 -0.2 830,846 + AMB_RS03960 0.29 -1.6 830,847 - AMB_RS03960 0.29 +0.4 830,847 - AMB_RS03960 0.29 -0.1 830,847 - AMB_RS03960 0.29 -2.7 830,847 - AMB_RS03960 0.29 +0.6 830,847 - AMB_RS03960 0.29 -0.1 830,847 - AMB_RS03960 0.29 +0.2 830,847 - AMB_RS03960 0.29 +0.5 830,847 - AMB_RS03960 0.29 -1.4 830,847 - AMB_RS03960 0.29 -0.4 830,847 - AMB_RS03960 0.29 -0.4 830,847 - AMB_RS03960 0.29 -2.2 830,847 - AMB_RS03960 0.29 -0.4 830,847 - AMB_RS03960 0.29 -0.3 830,847 - AMB_RS03960 0.29 -1.8 831,014 + AMB_RS03960 0.50 +0.8 831,014 + AMB_RS03960 0.50 -0.2 831,014 + AMB_RS03960 0.50 -2.1 831,015 - AMB_RS03960 0.50 -0.2 831,020 + AMB_RS03960 0.51 +0.0 831,021 - AMB_RS03960 0.51 -1.1 831,021 - AMB_RS03960 0.51 -1.2 831,362 + +0.4 831,362 + +0.5 831,362 + +1.2 831,362 + +0.0 831,362 + +0.0 831,362 + -1.2 831,362 + +0.5 831,362 + -0.4 831,362 + +0.1 831,362 + -0.6 831,362 + -1.8 831,363 - -1.2 831,363 - +1.4 831,363 - -1.6 831,363 - +0.3 831,363 - -1.6 831,363 - -0.6 831,363 - -2.5 831,363 - -1.4 831,363 - -0.1 831,634 + AMB_RS03965 0.30 -1.2 831,635 - AMB_RS03965 0.30 -1.6 831,635 - AMB_RS03965 0.30 -1.6 831,635 - AMB_RS03965 0.30 -1.6 831,635 - AMB_RS03965 0.30 +0.2 831,635 - AMB_RS03965 0.30 +0.0 831,857 - AMB_RS03965 0.60 -2.1 831,857 - AMB_RS03965 0.60 -0.3 831,904 + AMB_RS03965 0.66 -0.6 831,904 + AMB_RS03965 0.66 +0.1 831,904 + AMB_RS03965 0.66 -1.6 831,904 + AMB_RS03965 0.66 +0.1 831,905 - AMB_RS03965 0.66 -0.6 831,905 - AMB_RS03965 0.66 -0.6 831,905 - AMB_RS03965 0.66 -0.1 831,905 - AMB_RS03965 0.66 -2.4 832,425 + AMB_RS03970 0.22 -0.2 832,426 - AMB_RS03970 0.22 +0.2 832,426 - AMB_RS03970 0.22 -0.8 832,488 + AMB_RS03970 0.27 +0.1 832,489 - AMB_RS03970 0.27 -0.6 832,489 - AMB_RS03970 0.27 -1.0 832,489 - AMB_RS03970 0.27 +0.1 833,025 + AMB_RS03970 0.69 +0.2 833,025 + AMB_RS03970 0.69 +0.8 833,025 + AMB_RS03970 0.69 -0.0 833,025 + AMB_RS03970 0.69 -1.2 833,025 + AMB_RS03970 0.69 +0.4 833,026 - AMB_RS03970 0.69 +0.5 833,026 - AMB_RS03970 0.69 -1.8 833,026 - AMB_RS03970 0.69 -2.0 833,043 + AMB_RS03970 0.71 +0.4 833,043 + AMB_RS03970 0.71 +0.1 833,043 + AMB_RS03970 0.71 -1.0 833,043 + AMB_RS03970 0.71 -0.6 833,043 + AMB_RS03970 0.71 -0.2 833,043 + AMB_RS03970 0.71 +0.2 833,043 + AMB_RS03970 0.71 +1.4 833,044 - AMB_RS03970 0.71 -0.3 833,044 - AMB_RS03970 0.71 -1.2
Or see this region's nucleotide sequence