Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03835 and AMB_RS03840 are separated by 5 nucleotides AMB_RS03840 and AMB_RS03845 are separated by 19 nucleotides AMB_RS03845 and AMB_RS03850 are separated by 305 nucleotides
AMB_RS03835: AMB_RS03835 - YicC family protein, at 807,640 to 808,539
_RS03835
AMB_RS03840: AMB_RS03840 - guanylate kinase, at 808,545 to 809,189
_RS03840
AMB_RS03845: AMB_RS03845 - MFS transporter, at 809,209 to 810,423
_RS03845
AMB_RS03850: AMB_RS03850 - cytochrome b561, at 810,729 to 811,418
_RS03850
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1 at 808.438 kb on - strand, within AMB_RS03835 at 808.438 kb on - strand, within AMB_RS03835 at 808.537 kb on + strand at 808.537 kb on + strand at 809.306 kb on + strand at 809.306 kb on + strand at 809.307 kb on - strand at 809.324 kb on + strand at 809.406 kb on - strand, within AMB_RS03845 at 809.406 kb on - strand, within AMB_RS03845 at 809.406 kb on - strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.555 kb on + strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.556 kb on - strand, within AMB_RS03845 at 809.573 kb on + strand, within AMB_RS03845 at 809.574 kb on - strand, within AMB_RS03845 at 809.585 kb on + strand, within AMB_RS03845 at 809.585 kb on + strand, within AMB_RS03845 at 810.015 kb on + strand, within AMB_RS03845 at 810.015 kb on + strand, within AMB_RS03845 at 810.016 kb on - strand, within AMB_RS03845 at 810.463 kb on + strand at 810.463 kb on + strand at 810.463 kb on + strand at 810.514 kb on - strand at 810.522 kb on + strand at 810.931 kb on + strand, within AMB_RS03850 at 810.931 kb on + strand, within AMB_RS03850 at 810.932 kb on - strand, within AMB_RS03850 at 810.970 kb on + strand, within AMB_RS03850 at 810.970 kb on + strand, within AMB_RS03850 at 810.970 kb on + strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 811.039 kb on + strand, within AMB_RS03850 at 811.039 kb on + strand, within AMB_RS03850 at 811.040 kb on - strand, within AMB_RS03850 at 811.178 kb on - strand, within AMB_RS03850 at 811.225 kb on + strand, within AMB_RS03850 at 811.225 kb on + strand, within AMB_RS03850 at 811.226 kb on - strand, within AMB_RS03850 at 811.226 kb on - strand, within AMB_RS03850
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 808,438 - AMB_RS03835 0.89 -0.2 808,438 - AMB_RS03835 0.89 -1.6 808,537 + -1.8 808,537 + +1.0 809,306 + -0.1 809,306 + -1.4 809,307 - -1.2 809,324 + +0.2 809,406 - AMB_RS03845 0.16 +0.1 809,406 - AMB_RS03845 0.16 +0.1 809,406 - AMB_RS03845 0.16 +0.1 809,555 + AMB_RS03845 0.28 -0.5 809,555 + AMB_RS03845 0.28 -0.1 809,555 + AMB_RS03845 0.28 -1.4 809,555 + AMB_RS03845 0.28 +0.2 809,556 - AMB_RS03845 0.29 +0.5 809,556 - AMB_RS03845 0.29 -0.1 809,556 - AMB_RS03845 0.29 +0.4 809,556 - AMB_RS03845 0.29 -1.2 809,573 + AMB_RS03845 0.30 -0.4 809,574 - AMB_RS03845 0.30 +0.6 809,585 + AMB_RS03845 0.31 -0.5 809,585 + AMB_RS03845 0.31 -0.9 810,015 + AMB_RS03845 0.66 -0.0 810,015 + AMB_RS03845 0.66 -0.1 810,016 - AMB_RS03845 0.66 -0.1 810,463 + -0.9 810,463 + +0.0 810,463 + +0.4 810,514 - -0.6 810,522 + -1.2 810,931 + AMB_RS03850 0.29 +1.4 810,931 + AMB_RS03850 0.29 -0.6 810,932 - AMB_RS03850 0.29 +0.4 810,970 + AMB_RS03850 0.35 -0.0 810,970 + AMB_RS03850 0.35 +0.4 810,970 + AMB_RS03850 0.35 +0.4 810,971 - AMB_RS03850 0.35 +0.1 810,971 - AMB_RS03850 0.35 +1.0 810,971 - AMB_RS03850 0.35 -2.1 810,971 - AMB_RS03850 0.35 +0.1 811,039 + AMB_RS03850 0.45 +0.3 811,039 + AMB_RS03850 0.45 -0.0 811,040 - AMB_RS03850 0.45 +0.5 811,178 - AMB_RS03850 0.65 +0.4 811,225 + AMB_RS03850 0.72 +0.2 811,225 + AMB_RS03850 0.72 +1.4 811,226 - AMB_RS03850 0.72 -1.2 811,226 - AMB_RS03850 0.72 -1.2
Or see this region's nucleotide sequence